miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24488 5' -56 NC_005264.1 + 58764 0.72 0.636139
Target:  5'- uCAGAGGcGCaCgCGCGGUGGUCGgcGCa -3'
miRNA:   3'- -GUUUCCaCG-G-GCGCCGCUAGCaaCGg -5'
24488 5' -56 NC_005264.1 + 12916 0.71 0.65643
Target:  5'- gCGAuGGUGUgCGUGGCcAUCGUgGCCa -3'
miRNA:   3'- -GUUuCCACGgGCGCCGcUAGCAaCGG- -5'
24488 5' -56 NC_005264.1 + 17013 0.71 0.696715
Target:  5'- --cAGGgacgGCaaagGCGGCGAUCGUcGCCa -3'
miRNA:   3'- guuUCCa---CGgg--CGCCGCUAGCAaCGG- -5'
24488 5' -56 NC_005264.1 + 133675 0.71 0.706675
Target:  5'- cUAGAGGaacgccUGCUCGCcGCGGUCcUUGCCg -3'
miRNA:   3'- -GUUUCC------ACGGGCGcCGCUAGcAACGG- -5'
24488 5' -56 NC_005264.1 + 52926 0.7 0.717558
Target:  5'- uCGAGGGgcauugcauggccgcGCCCGCGGCGcAUUGc-GCCg -3'
miRNA:   3'- -GUUUCCa--------------CGGGCGCCGC-UAGCaaCGG- -5'
24488 5' -56 NC_005264.1 + 42064 0.69 0.792442
Target:  5'- -----uUGCCCGCGGCGcgUGgcGUCa -3'
miRNA:   3'- guuuccACGGGCGCCGCuaGCaaCGG- -5'
24488 5' -56 NC_005264.1 + 155995 0.68 0.835532
Target:  5'- aCAGAGGuUGCgCGCuGGCGccauaGUCGccGCCg -3'
miRNA:   3'- -GUUUCC-ACGgGCG-CCGC-----UAGCaaCGG- -5'
24488 5' -56 NC_005264.1 + 84084 0.68 0.835532
Target:  5'- aAAGGGUGCUCGCGGCuAUUGa---- -3'
miRNA:   3'- gUUUCCACGGGCGCCGcUAGCaacgg -5'
24488 5' -56 NC_005264.1 + 127042 0.68 0.835532
Target:  5'- gCAGAGGcGCCCGCcaCGA-CGgcGCCa -3'
miRNA:   3'- -GUUUCCaCGGGCGccGCUaGCaaCGG- -5'
24488 5' -56 NC_005264.1 + 1725 0.68 0.818788
Target:  5'- gGGGGGUGCCCauacuaUGGCGAUCcugGUCg -3'
miRNA:   3'- gUUUCCACGGGc-----GCCGCUAGcaaCGG- -5'
24488 5' -56 NC_005264.1 + 151896 0.69 0.801377
Target:  5'- uCGucGGU-CCCGCGGUGGUUGgcUGUCg -3'
miRNA:   3'- -GUuuCCAcGGGCGCCGCUAGCa-ACGG- -5'
24488 5' -56 NC_005264.1 + 59987 0.69 0.792442
Target:  5'- ---cGGUGgCCGCGaGCGAgacggccgCGUgGCCg -3'
miRNA:   3'- guuuCCACgGGCGC-CGCUa-------GCAaCGG- -5'
24488 5' -56 NC_005264.1 + 31783 0.66 0.907341
Target:  5'- --cGGGcgcuucGCCUaaggGCGGCGGUCGccGCCg -3'
miRNA:   3'- guuUCCa-----CGGG----CGCCGCUAGCaaCGG- -5'
24488 5' -56 NC_005264.1 + 131660 0.66 0.913309
Target:  5'- ---cGGUGCCCGCcGCcaGAcCGUUGgCg -3'
miRNA:   3'- guuuCCACGGGCGcCG--CUaGCAACgG- -5'
24488 5' -56 NC_005264.1 + 124474 0.66 0.913309
Target:  5'- -cGAGGUGCggaaGCGGCGAgaaaaagCGgcaGCCu -3'
miRNA:   3'- guUUCCACGgg--CGCCGCUa------GCaa-CGG- -5'
24488 5' -56 NC_005264.1 + 82627 0.66 0.913309
Target:  5'- gGAGGGgauaUGCgCGUGGCGuuugCGUgGCCc -3'
miRNA:   3'- gUUUCC----ACGgGCGCCGCua--GCAaCGG- -5'
24488 5' -56 NC_005264.1 + 3462 0.66 0.919044
Target:  5'- aCGAGGGUcUCgGgGGCGAUgGgcUUGCCg -3'
miRNA:   3'- -GUUUCCAcGGgCgCCGCUAgC--AACGG- -5'
24488 5' -56 NC_005264.1 + 98049 0.66 0.919044
Target:  5'- ---cGGUGCCCaugggggcgcuGCGcGCaGAUCGUUucgcgGCCa -3'
miRNA:   3'- guuuCCACGGG-----------CGC-CG-CUAGCAA-----CGG- -5'
24488 5' -56 NC_005264.1 + 146410 0.66 0.929809
Target:  5'- --cGGGcagGcCCCGCGGCaGUCGagcggcccUUGCCu -3'
miRNA:   3'- guuUCCa--C-GGGCGCCGcUAGC--------AACGG- -5'
24488 5' -56 NC_005264.1 + 44770 1.12 0.001973
Target:  5'- cCAAAGGUGCCCGCGGCGAUCGUUGCCg -3'
miRNA:   3'- -GUUUCCACGGGCGCCGCUAGCAACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.