miRNA display CGI


Results 41 - 60 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24488 5' -56 NC_005264.1 + 146824 0.7 0.726399
Target:  5'- aCGGAGG----CGCGGCGGUCGUcgccUGCCa -3'
miRNA:   3'- -GUUUCCacggGCGCCGCUAGCA----ACGG- -5'
24488 5' -56 NC_005264.1 + 144427 0.71 0.66655
Target:  5'- gAGAGGgcgcGCCUGCgccggccggaacGGUGGUCGUUGUCc -3'
miRNA:   3'- gUUUCCa---CGGGCG------------CCGCUAGCAACGG- -5'
24488 5' -56 NC_005264.1 + 124155 0.73 0.59558
Target:  5'- gAAAGGUGCUgggcaaCGUGGUGAUgGgcGCCg -3'
miRNA:   3'- gUUUCCACGG------GCGCCGCUAgCaaCGG- -5'
24488 5' -56 NC_005264.1 + 136315 0.73 0.565411
Target:  5'- aCAGAGGUGUacuugaagcccgCCGCGGCGuagaagcugguUCGgcGCCg -3'
miRNA:   3'- -GUUUCCACG------------GGCGCCGCu----------AGCaaCGG- -5'
24488 5' -56 NC_005264.1 + 143862 0.74 0.506464
Target:  5'- gCGGAuGuGUGCCCG-GGCGAUCGUUuCCg -3'
miRNA:   3'- -GUUU-C-CACGGGCgCCGCUAGCAAcGG- -5'
24488 5' -56 NC_005264.1 + 8306 0.68 0.843634
Target:  5'- aCGGGGGcaccUGCgCCGCGGCG-UCGccGUCg -3'
miRNA:   3'- -GUUUCC----ACG-GGCGCCGCuAGCaaCGG- -5'
24488 5' -56 NC_005264.1 + 93114 0.68 0.851547
Target:  5'- ---cGGUGCCCGCGcucccGCGGUucacgaUGgcGCCa -3'
miRNA:   3'- guuuCCACGGGCGC-----CGCUA------GCaaCGG- -5'
24488 5' -56 NC_005264.1 + 20230 0.68 0.859264
Target:  5'- -cGAGGUaGCCCggcGUGGCcAUCGUcgcgGCCg -3'
miRNA:   3'- guUUCCA-CGGG---CGCCGcUAGCAa---CGG- -5'
24488 5' -56 NC_005264.1 + 146410 0.66 0.929809
Target:  5'- --cGGGcagGcCCCGCGGCaGUCGagcggcccUUGCCu -3'
miRNA:   3'- guuUCCa--C-GGGCGCCGcUAGC--------AACGG- -5'
24488 5' -56 NC_005264.1 + 98049 0.66 0.919044
Target:  5'- ---cGGUGCCCaugggggcgcuGCGcGCaGAUCGUUucgcgGCCa -3'
miRNA:   3'- guuuCCACGGG-----------CGC-CG-CUAGCAA-----CGG- -5'
24488 5' -56 NC_005264.1 + 3462 0.66 0.919044
Target:  5'- aCGAGGGUcUCgGgGGCGAUgGgcUUGCCg -3'
miRNA:   3'- -GUUUCCAcGGgCgCCGCUAgC--AACGG- -5'
24488 5' -56 NC_005264.1 + 82627 0.66 0.913309
Target:  5'- gGAGGGgauaUGCgCGUGGCGuuugCGUgGCCc -3'
miRNA:   3'- gUUUCC----ACGgGCGCCGCua--GCAaCGG- -5'
24488 5' -56 NC_005264.1 + 124474 0.66 0.913309
Target:  5'- -cGAGGUGCggaaGCGGCGAgaaaaagCGgcaGCCu -3'
miRNA:   3'- guUUCCACGgg--CGCCGCUa------GCaa-CGG- -5'
24488 5' -56 NC_005264.1 + 131660 0.66 0.913309
Target:  5'- ---cGGUGCCCGCcGCcaGAcCGUUGgCg -3'
miRNA:   3'- guuuCCACGGGCGcCG--CUaGCAACgG- -5'
24488 5' -56 NC_005264.1 + 31783 0.66 0.907341
Target:  5'- --cGGGcgcuucGCCUaaggGCGGCGGUCGccGCCg -3'
miRNA:   3'- guuUCCa-----CGGG----CGCCGCUAGCaaCGG- -5'
24488 5' -56 NC_005264.1 + 68994 0.66 0.901142
Target:  5'- --cGGGccagugGCCCGCGGCccugucgccAUCGUacugUGCCa -3'
miRNA:   3'- guuUCCa-----CGGGCGCCGc--------UAGCA----ACGG- -5'
24488 5' -56 NC_005264.1 + 66178 0.67 0.880482
Target:  5'- cCGGGGGUGCgcuaacgCCGCGcGCGA-CGguuuugaacUUGCCg -3'
miRNA:   3'- -GUUUCCACG-------GGCGC-CGCUaGC---------AACGG- -5'
24488 5' -56 NC_005264.1 + 106519 0.67 0.874087
Target:  5'- ---cGGUGCgCGaCGGCGGcagCGcgGCCg -3'
miRNA:   3'- guuuCCACGgGC-GCCGCUa--GCaaCGG- -5'
24488 5' -56 NC_005264.1 + 15380 0.67 0.869728
Target:  5'- ---cGGUGCCgcaGUGGCGAuagcuugagguugggUCGcgGCCg -3'
miRNA:   3'- guuuCCACGGg--CGCCGCU---------------AGCaaCGG- -5'
24488 5' -56 NC_005264.1 + 32379 0.68 0.859264
Target:  5'- -cGAGGaUGCCgGCGGCcggCGUccGCCg -3'
miRNA:   3'- guUUCC-ACGGgCGCCGcuaGCAa-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.