miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24488 5' -56 NC_005264.1 + 157229 0.66 0.929809
Target:  5'- -cAAGGUGUUCGCGuGgGucuUCGUggcgGCCc -3'
miRNA:   3'- guUUCCACGGGCGC-CgCu--AGCAa---CGG- -5'
24488 5' -56 NC_005264.1 + 36968 0.68 0.835532
Target:  5'- aCAGAGGuUGCgCGCuGGCGccauaGUCGccGCCg -3'
miRNA:   3'- -GUUUCC-ACGgGCG-CCGC-----UAGCaaCGG- -5'
24488 5' -56 NC_005264.1 + 32870 0.69 0.801377
Target:  5'- uCGucGGU-CCCGCGGUGGUUGgcUGUCg -3'
miRNA:   3'- -GUuuCCAcGGGCGCCGCUAGCa-ACGG- -5'
24488 5' -56 NC_005264.1 + 44770 1.12 0.001973
Target:  5'- cCAAAGGUGCCCGCGGCGAUCGUUGCCg -3'
miRNA:   3'- -GUUUCCACGGGCGCCGCUAGCAACGG- -5'
24488 5' -56 NC_005264.1 + 82627 0.66 0.913309
Target:  5'- gGAGGGgauaUGCgCGUGGCGuuugCGUgGCCc -3'
miRNA:   3'- gUUUCC----ACGgGCGCCGCua--GCAaCGG- -5'
24488 5' -56 NC_005264.1 + 124474 0.66 0.913309
Target:  5'- -cGAGGUGCggaaGCGGCGAgaaaaagCGgcaGCCu -3'
miRNA:   3'- guUUCCACGgg--CGCCGCUa------GCaa-CGG- -5'
24488 5' -56 NC_005264.1 + 31783 0.66 0.907341
Target:  5'- --cGGGcgcuucGCCUaaggGCGGCGGUCGccGCCg -3'
miRNA:   3'- guuUCCa-----CGGG----CGCCGCUAGCaaCGG- -5'
24488 5' -56 NC_005264.1 + 68994 0.66 0.901142
Target:  5'- --cGGGccagugGCCCGCGGCccugucgccAUCGUacugUGCCa -3'
miRNA:   3'- guuUCCa-----CGGGCGCCGc--------UAGCA----ACGG- -5'
24488 5' -56 NC_005264.1 + 15380 0.67 0.869728
Target:  5'- ---cGGUGCCgcaGUGGCGAuagcuugagguugggUCGcgGCCg -3'
miRNA:   3'- guuuCCACGGg--CGCCGCU---------------AGCaaCGG- -5'
24488 5' -56 NC_005264.1 + 147357 0.68 0.835532
Target:  5'- --cAGGcccaUGCCCGCcGCGAUCGccGCUu -3'
miRNA:   3'- guuUCC----ACGGGCGcCGCUAGCaaCGG- -5'
24488 5' -56 NC_005264.1 + 20230 0.68 0.859264
Target:  5'- -cGAGGUaGCCCggcGUGGCcAUCGUcgcgGCCg -3'
miRNA:   3'- guUUCCA-CGGG---CGCCGcUAGCAa---CGG- -5'
24488 5' -56 NC_005264.1 + 106519 0.67 0.874087
Target:  5'- ---cGGUGCgCGaCGGCGGcagCGcgGCCg -3'
miRNA:   3'- guuuCCACGgGC-GCCGCUa--GCaaCGG- -5'
24488 5' -56 NC_005264.1 + 146410 0.66 0.929809
Target:  5'- --cGGGcagGcCCCGCGGCaGUCGagcggcccUUGCCu -3'
miRNA:   3'- guuUCCa--C-GGGCGCCGcUAGC--------AACGG- -5'
24488 5' -56 NC_005264.1 + 93114 0.68 0.851547
Target:  5'- ---cGGUGCCCGCGcucccGCGGUucacgaUGgcGCCa -3'
miRNA:   3'- guuuCCACGGGCGC-----CGCUA------GCaaCGG- -5'
24488 5' -56 NC_005264.1 + 98049 0.66 0.919044
Target:  5'- ---cGGUGCCCaugggggcgcuGCGcGCaGAUCGUUucgcgGCCa -3'
miRNA:   3'- guuuCCACGGG-----------CGC-CG-CUAGCAA-----CGG- -5'
24488 5' -56 NC_005264.1 + 66178 0.67 0.880482
Target:  5'- cCGGGGGUGCgcuaacgCCGCGcGCGA-CGguuuugaacUUGCCg -3'
miRNA:   3'- -GUUUCCACG-------GGCGC-CGCUaGC---------AACGG- -5'
24488 5' -56 NC_005264.1 + 8306 0.68 0.843634
Target:  5'- aCGGGGGcaccUGCgCCGCGGCG-UCGccGUCg -3'
miRNA:   3'- -GUUUCC----ACG-GGCGCCGCuAGCaaCGG- -5'
24488 5' -56 NC_005264.1 + 8015 0.68 0.835532
Target:  5'- gCAGAGGcGCCCGCcaCGA-CGgcGCCa -3'
miRNA:   3'- -GUUUCCaCGGGCGccGCUaGCaaCGG- -5'
24488 5' -56 NC_005264.1 + 3462 0.66 0.919044
Target:  5'- aCGAGGGUcUCgGgGGCGAUgGgcUUGCCg -3'
miRNA:   3'- -GUUUCCAcGGgCgCCGCUAgC--AACGG- -5'
24488 5' -56 NC_005264.1 + 131660 0.66 0.913309
Target:  5'- ---cGGUGCCCGCcGCcaGAcCGUUGgCg -3'
miRNA:   3'- guuuCCACGGGCGcCG--CUaGCAACgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.