miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24488 5' -56 NC_005264.1 + 32379 0.68 0.859264
Target:  5'- -cGAGGaUGCCgGCGGCcggCGUccGCCg -3'
miRNA:   3'- guUUCC-ACGGgCGCCGcuaGCAa-CGG- -5'
24488 5' -56 NC_005264.1 + 136315 0.73 0.565411
Target:  5'- aCAGAGGUGUacuugaagcccgCCGCGGCGuagaagcugguUCGgcGCCg -3'
miRNA:   3'- -GUUUCCACG------------GGCGCCGCu----------AGCaaCGG- -5'
24488 5' -56 NC_005264.1 + 32870 0.69 0.801377
Target:  5'- uCGucGGU-CCCGCGGUGGUUGgcUGUCg -3'
miRNA:   3'- -GUuuCCAcGGGCGCCGCUAGCa-ACGG- -5'
24488 5' -56 NC_005264.1 + 15380 0.67 0.869728
Target:  5'- ---cGGUGCCgcaGUGGCGAuagcuugagguugggUCGcgGCCg -3'
miRNA:   3'- guuuCCACGGg--CGCCGCU---------------AGCaaCGG- -5'
24488 5' -56 NC_005264.1 + 102108 0.7 0.745803
Target:  5'- -uGAGGacgGCUgGCGGCGGUaCGagGCCg -3'
miRNA:   3'- guUUCCa--CGGgCGCCGCUA-GCaaCGG- -5'
24488 5' -56 NC_005264.1 + 143862 0.74 0.506464
Target:  5'- gCGGAuGuGUGCCCG-GGCGAUCGUUuCCg -3'
miRNA:   3'- -GUUU-C-CACGGGCgCCGCUAGCAAcGG- -5'
24488 5' -56 NC_005264.1 + 124155 0.73 0.59558
Target:  5'- gAAAGGUGCUgggcaaCGUGGUGAUgGgcGCCg -3'
miRNA:   3'- gUUUCCACGG------GCGCCGCUAgCaaCGG- -5'
24488 5' -56 NC_005264.1 + 106519 0.67 0.874087
Target:  5'- ---cGGUGCgCGaCGGCGGcagCGcgGCCg -3'
miRNA:   3'- guuuCCACGgGC-GCCGCUa--GCaaCGG- -5'
24488 5' -56 NC_005264.1 + 66178 0.67 0.880482
Target:  5'- cCGGGGGUGCgcuaacgCCGCGcGCGA-CGguuuugaacUUGCCg -3'
miRNA:   3'- -GUUUCCACG-------GGCGC-CGCUaGC---------AACGG- -5'
24488 5' -56 NC_005264.1 + 20230 0.68 0.859264
Target:  5'- -cGAGGUaGCCCggcGUGGCcAUCGUcgcgGCCg -3'
miRNA:   3'- guUUCCA-CGGG---CGCCGcUAGCAa---CGG- -5'
24488 5' -56 NC_005264.1 + 147357 0.68 0.835532
Target:  5'- --cAGGcccaUGCCCGCcGCGAUCGccGCUu -3'
miRNA:   3'- guuUCC----ACGGGCGcCGCUAGCaaCGG- -5'
24488 5' -56 NC_005264.1 + 133675 0.71 0.706675
Target:  5'- cUAGAGGaacgccUGCUCGCcGCGGUCcUUGCCg -3'
miRNA:   3'- -GUUUCC------ACGGGCGcCGCUAGcAACGG- -5'
24488 5' -56 NC_005264.1 + 47443 0.66 0.921272
Target:  5'- uUAAGGGUauagaugccaagaccGCCCcUGGgGGUUGUUGUCg -3'
miRNA:   3'- -GUUUCCA---------------CGGGcGCCgCUAGCAACGG- -5'
24488 5' -56 NC_005264.1 + 122489 0.66 0.919044
Target:  5'- aCGAGGGUcUCgGgGGCGAUgGgcUUGCCg -3'
miRNA:   3'- -GUUUCCAcGGgCgCCGCUAgC--AACGG- -5'
24488 5' -56 NC_005264.1 + 103640 0.66 0.913309
Target:  5'- ----uGUGUuuGCGGUucaagGAUCGUUGCa -3'
miRNA:   3'- guuucCACGggCGCCG-----CUAGCAACGg -5'
24488 5' -56 NC_005264.1 + 150809 0.66 0.907341
Target:  5'- --cGGGcgcuucGCCUaaggGCGGCGGUCGccGCCg -3'
miRNA:   3'- guuUCCa-----CGGG----CGCCGCUAGCaaCGG- -5'
24488 5' -56 NC_005264.1 + 117910 0.66 0.907341
Target:  5'- gCAAcGG-GCCCGCGGU--UCGcUUGCg -3'
miRNA:   3'- -GUUuCCaCGGGCGCCGcuAGC-AACGg -5'
24488 5' -56 NC_005264.1 + 127042 0.68 0.835532
Target:  5'- gCAGAGGcGCCCGCcaCGA-CGgcGCCa -3'
miRNA:   3'- -GUUUCCaCGGGCGccGCUaGCaaCGG- -5'
24488 5' -56 NC_005264.1 + 84084 0.68 0.835532
Target:  5'- aAAGGGUGCUCGCGGCuAUUGa---- -3'
miRNA:   3'- gUUUCCACGGGCGCCGcUAGCaacgg -5'
24488 5' -56 NC_005264.1 + 155995 0.68 0.835532
Target:  5'- aCAGAGGuUGCgCGCuGGCGccauaGUCGccGCCg -3'
miRNA:   3'- -GUUUCC-ACGgGCG-CCGC-----UAGCaaCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.