miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24489 5' -52.8 NC_005264.1 + 68013 0.66 0.975706
Target:  5'- gCGGGGGucGGGcAGAucuucGAGAGGGGuGGg- -3'
miRNA:   3'- -GCCCCUuuCUC-UCU-----CUUUUCCC-CCau -5'
24489 5' -52.8 NC_005264.1 + 41819 0.66 0.973309
Target:  5'- cCGGGGAAGGcGAGcauaagaugggaaaGGAAGugcauaugggagcucGGGGGGg- -3'
miRNA:   3'- -GCCCCUUUCuCUC--------------UCUUU---------------UCCCCCau -5'
24489 5' -52.8 NC_005264.1 + 160845 0.66 0.973309
Target:  5'- cCGGGGAAGGcGAGcauaagaugggaaaGGAAGugcauaugggagcucGGGGGGg- -3'
miRNA:   3'- -GCCCCUUUCuCUC--------------UCUUU---------------UCCCCCau -5'
24489 5' -52.8 NC_005264.1 + 123207 0.66 0.973033
Target:  5'- uGGGGAAgcGGAGGguccGAGGGAcGGGaGGUu -3'
miRNA:   3'- gCCCCUU--UCUCU----CUCUUUuCCC-CCAu -5'
24489 5' -52.8 NC_005264.1 + 119129 0.66 0.973033
Target:  5'- uGGGGGAGG-GcGAGGAcgcauGGGGGa- -3'
miRNA:   3'- gCCCCUUUCuCuCUCUUuu---CCCCCau -5'
24489 5' -52.8 NC_005264.1 + 4180 0.66 0.973033
Target:  5'- uGGGGAAgcGGAGGguccGAGGGAcGGGaGGUu -3'
miRNA:   3'- gCCCCUU--UCUCU----CUCUUUuCCC-CCAu -5'
24489 5' -52.8 NC_005264.1 + 44092 0.66 0.973033
Target:  5'- aCGGGGAgcuugcccgAAGAcuGGGGAGGGGGcGGGa- -3'
miRNA:   3'- -GCCCCU---------UUCUc-UCUCUUUUCC-CCCau -5'
24489 5' -52.8 NC_005264.1 + 19274 0.66 0.970152
Target:  5'- cCGGGGAcGGcAGAGuc-GGGGGaGGGUAg -3'
miRNA:   3'- -GCCCCUuUC-UCUCucuUUUCC-CCCAU- -5'
24489 5' -52.8 NC_005264.1 + 1414 0.67 0.967058
Target:  5'- gGGGGAAauaagcGGGGAuGAGGAAAGGGc--- -3'
miRNA:   3'- gCCCCUU------UCUCU-CUCUUUUCCCccau -5'
24489 5' -52.8 NC_005264.1 + 31174 0.67 0.967058
Target:  5'- aCGGGGGccGGAGGGcgagcgaguGGGAcGGGGGGc- -3'
miRNA:   3'- -GCCCCUu-UCUCUC---------UCUUuUCCCCCau -5'
24489 5' -52.8 NC_005264.1 + 150201 0.67 0.967058
Target:  5'- aCGGGGGccGGAGGGcgagcgaguGGGAcGGGGGGc- -3'
miRNA:   3'- -GCCCCUu-UCUCUC---------UCUUuUCCCCCau -5'
24489 5' -52.8 NC_005264.1 + 120441 0.67 0.967058
Target:  5'- gGGGGAAauaagcGGGGAuGAGGAAAGGGc--- -3'
miRNA:   3'- gCCCCUU------UCUCU-CUCUUUUCCCccau -5'
24489 5' -52.8 NC_005264.1 + 143587 0.67 0.967058
Target:  5'- cCGGGGcccGGAGGGAacGAGAAuGGcgcGGGGUAc -3'
miRNA:   3'- -GCCCC---UUUCUCU--CUCUUuUC---CCCCAU- -5'
24489 5' -52.8 NC_005264.1 + 13049 0.67 0.952424
Target:  5'- aGGGcGAcgAGGGGAGAGAAuuuucGGGcGGGGa- -3'
miRNA:   3'- gCCC-CU--UUCUCUCUCUU-----UUC-CCCCau -5'
24489 5' -52.8 NC_005264.1 + 23985 0.67 0.952424
Target:  5'- aGuGGGAAGGGGAGguGGAuGAGGcGGGc- -3'
miRNA:   3'- gC-CCCUUUCUCUC--UCUuUUCC-CCCau -5'
24489 5' -52.8 NC_005264.1 + 132076 0.67 0.952424
Target:  5'- aGGGcGAcgAGGGGAGAGAAuuuucGGGcGGGGa- -3'
miRNA:   3'- gCCC-CU--UUCUCUCUCUU-----UUC-CCCCau -5'
24489 5' -52.8 NC_005264.1 + 92541 0.67 0.948175
Target:  5'- gCGGGGAacAAGAuGGAGu---GGGGGa- -3'
miRNA:   3'- -GCCCCU--UUCUcUCUCuuuuCCCCCau -5'
24489 5' -52.8 NC_005264.1 + 133917 0.67 0.948175
Target:  5'- gGGGGugGGAG-GAGGAuaauauuGGGGGcGUGa -3'
miRNA:   3'- gCCCCuuUCUCuCUCUUu------UCCCC-CAU- -5'
24489 5' -52.8 NC_005264.1 + 43506 0.68 0.923229
Target:  5'- gGGGGGugggagguGGGAGAccGAGGAAGGGcucGGGUGc -3'
miRNA:   3'- gCCCCU--------UUCUCU--CUCUUUUCC---CCCAU- -5'
24489 5' -52.8 NC_005264.1 + 162533 0.68 0.923229
Target:  5'- gGGGGGugggagguGGGAGAccGAGGAAGGGcucGGGUGc -3'
miRNA:   3'- gCCCCU--------UUCUCU--CUCUUUUCC---CCCAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.