Results 1 - 20 of 55 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24493 | 5' | -59.4 | NC_005264.1 | + | 160213 | 1.07 | 0.001968 |
Target: 5'- gAGACAGAAGACUCCGCCCCGCCUGCUc -3' miRNA: 3'- -UCUGUCUUCUGAGGCGGGGCGGACGA- -5' |
|||||||
24493 | 5' | -59.4 | NC_005264.1 | + | 41186 | 1.07 | 0.001968 |
Target: 5'- gAGACAGAAGACUCCGCCCCGCCUGCUc -3' miRNA: 3'- -UCUGUCUUCUGAGGCGGGGCGGACGA- -5' |
|||||||
24493 | 5' | -59.4 | NC_005264.1 | + | 152767 | 0.8 | 0.129613 |
Target: 5'- cGGCGGGAGAUUCCGCCgCGgCUGCa -3' miRNA: 3'- uCUGUCUUCUGAGGCGGgGCgGACGa -5' |
|||||||
24493 | 5' | -59.4 | NC_005264.1 | + | 109841 | 0.73 | 0.393615 |
Target: 5'- gAGGCAGAGGAUUuuGCCCgcgagCGCgaGCUa -3' miRNA: 3'- -UCUGUCUUCUGAggCGGG-----GCGgaCGA- -5' |
|||||||
24493 | 5' | -59.4 | NC_005264.1 | + | 15862 | 0.72 | 0.436355 |
Target: 5'- aAGAUucucgAGGAGGCUCCGCa--GCCUGCg -3' miRNA: 3'- -UCUG-----UCUUCUGAGGCGgggCGGACGa -5' |
|||||||
24493 | 5' | -59.4 | NC_005264.1 | + | 38596 | 0.71 | 0.463247 |
Target: 5'- -cGCGGAAGaagaGCUUCGCCUCGCCgcgGCg -3' miRNA: 3'- ucUGUCUUC----UGAGGCGGGGCGGa--CGa -5' |
|||||||
24493 | 5' | -59.4 | NC_005264.1 | + | 157623 | 0.71 | 0.463247 |
Target: 5'- -cGCGGAAGaagaGCUUCGCCUCGCCgcgGCg -3' miRNA: 3'- ucUGUCUUC----UGAGGCGGGGCGGa--CGa -5' |
|||||||
24493 | 5' | -59.4 | NC_005264.1 | + | 39818 | 0.71 | 0.481649 |
Target: 5'- uGGGCgAGGAGGCaugugCCGCCCUGCUUgGCg -3' miRNA: 3'- -UCUG-UCUUCUGa----GGCGGGGCGGA-CGa -5' |
|||||||
24493 | 5' | -59.4 | NC_005264.1 | + | 158844 | 0.71 | 0.481649 |
Target: 5'- uGGGCgAGGAGGCaugugCCGCCCUGCUUgGCg -3' miRNA: 3'- -UCUG-UCUUCUGa----GGCGGGGCGGA-CGa -5' |
|||||||
24493 | 5' | -59.4 | NC_005264.1 | + | 3505 | 0.71 | 0.490982 |
Target: 5'- gGGGCAGggGAUccucgccgUCCGCCUCGUCgaaccGCg -3' miRNA: 3'- -UCUGUCuuCUG--------AGGCGGGGCGGa----CGa -5' |
|||||||
24493 | 5' | -59.4 | NC_005264.1 | + | 158727 | 0.71 | 0.490982 |
Target: 5'- uGGCAGAGGGgacaccCUCgGCCCCGUCgUGCc -3' miRNA: 3'- uCUGUCUUCU------GAGgCGGGGCGG-ACGa -5' |
|||||||
24493 | 5' | -59.4 | NC_005264.1 | + | 122532 | 0.71 | 0.490982 |
Target: 5'- gGGGCAGggGAUccucgccgUCCGCCUCGUCgaaccGCg -3' miRNA: 3'- -UCUGUCuuCUG--------AGGCGGGGCGGa----CGa -5' |
|||||||
24493 | 5' | -59.4 | NC_005264.1 | + | 39701 | 0.71 | 0.490982 |
Target: 5'- uGGCAGAGGGgacaccCUCgGCCCCGUCgUGCc -3' miRNA: 3'- uCUGUCUUCU------GAGgCGGGGCGG-ACGa -5' |
|||||||
24493 | 5' | -59.4 | NC_005264.1 | + | 101934 | 0.7 | 0.509893 |
Target: 5'- aGGACauaaAGAAGAUcuuuacgCCGUCCCGCCUGg- -3' miRNA: 3'- -UCUG----UCUUCUGa------GGCGGGGCGGACga -5' |
|||||||
24493 | 5' | -59.4 | NC_005264.1 | + | 158846 | 0.7 | 0.529102 |
Target: 5'- cGACAGAGaAC-CCGCCgCCGCCgaaugcgGCUa -3' miRNA: 3'- uCUGUCUUcUGaGGCGG-GGCGGa------CGA- -5' |
|||||||
24493 | 5' | -59.4 | NC_005264.1 | + | 95002 | 0.7 | 0.529102 |
Target: 5'- aGGACAuaauGAAGAgcaUCUGCCCCGCggGCUg -3' miRNA: 3'- -UCUGU----CUUCUg--AGGCGGGGCGgaCGA- -5' |
|||||||
24493 | 5' | -59.4 | NC_005264.1 | + | 34234 | 0.7 | 0.548571 |
Target: 5'- aAGACGGAcGGGUUUCGUCCCGCCucgUGCg -3' miRNA: 3'- -UCUGUCU-UCUGAGGCGGGGCGG---ACGa -5' |
|||||||
24493 | 5' | -59.4 | NC_005264.1 | + | 77345 | 0.7 | 0.548571 |
Target: 5'- -cGCGGGAGAaguuggcgauCUCCGUCCCGUCUaGCg -3' miRNA: 3'- ucUGUCUUCU----------GAGGCGGGGCGGA-CGa -5' |
|||||||
24493 | 5' | -59.4 | NC_005264.1 | + | 76677 | 0.7 | 0.55839 |
Target: 5'- cGGCAGAAGAuacCUCUGCCCaGCUUgGCg -3' miRNA: 3'- uCUGUCUUCU---GAGGCGGGgCGGA-CGa -5' |
|||||||
24493 | 5' | -59.4 | NC_005264.1 | + | 78023 | 0.69 | 0.578169 |
Target: 5'- uGACGGcGAGGCUUCGCUCCGugcgccaugcCCUGCc -3' miRNA: 3'- uCUGUC-UUCUGAGGCGGGGC----------GGACGa -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home