miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
245 5' -59.5 AC_000008.1 + 34272 0.66 0.350752
Target:  5'- gGCUuauucUGCGGUGGuGGAUguuaucagggcaGCGGCGCa- -3'
miRNA:   3'- aCGGu----ACGCCGUC-CCUA------------UGCCGCGau -5'
245 5' -59.5 AC_000008.1 + 22450 0.66 0.317632
Target:  5'- cGCUAUGCgccacuGGCAGGGAcACGuuGCg- -3'
miRNA:   3'- aCGGUACG------CCGUCCCUaUGCcgCGau -5'
245 5' -59.5 AC_000008.1 + 26168 0.66 0.317632
Target:  5'- gGCUGcgGCGGCggGGGGAUugGGUugaGCUc -3'
miRNA:   3'- aCGGUa-CGCCG--UCCCUAugCCG---CGAu -5'
245 5' -59.5 AC_000008.1 + 6637 0.66 0.317632
Target:  5'- cUGCCAUGC-GCGGGcGGcaaGCGcGCGCUc -3'
miRNA:   3'- -ACGGUACGcCGUCC-CUa--UGC-CGCGAu -5'
245 5' -59.5 AC_000008.1 + 9526 0.66 0.317632
Target:  5'- cGCCGUcGCcGCGGGGAgaugauCGaGCGCUu -3'
miRNA:   3'- aCGGUA-CGcCGUCCCUau----GC-CGCGAu -5'
245 5' -59.5 AC_000008.1 + 16240 0.67 0.294372
Target:  5'- gUGCCGggucgGCGGCGGuGGcgAC-GUGCUAc -3'
miRNA:   3'- -ACGGUa----CGCCGUC-CCuaUGcCGCGAU- -5'
245 5' -59.5 AC_000008.1 + 17265 0.67 0.294372
Target:  5'- aUGCCcucUGUGGCGGuGGcaAUACuGGUGCUAc -3'
miRNA:   3'- -ACGGu--ACGCCGUC-CC--UAUG-CCGCGAU- -5'
245 5' -59.5 AC_000008.1 + 26693 0.67 0.294372
Target:  5'- cUGCaCcgGCGGCAGcGGcaGCGGCaGCa- -3'
miRNA:   3'- -ACG-GuaCGCCGUC-CCuaUGCCG-CGau -5'
245 5' -59.5 AC_000008.1 + 34867 0.67 0.272462
Target:  5'- uUGUCAUGguuccUGGCGGGGAagugGCcGCGCUGg -3'
miRNA:   3'- -ACGGUAC-----GCCGUCCCUa---UGcCGCGAU- -5'
245 5' -59.5 AC_000008.1 + 8557 0.68 0.251881
Target:  5'- aGUCGcGCcGCGGGGAUGCGGC-CUc -3'
miRNA:   3'- aCGGUaCGcCGUCCCUAUGCCGcGAu -5'
245 5' -59.5 AC_000008.1 + 16038 0.68 0.238883
Target:  5'- cGCCAUcgacGCGGUGGuGGAggaGGCGCg- -3'
miRNA:   3'- aCGGUA----CGCCGUC-CCUaugCCGCGau -5'
245 5' -59.5 AC_000008.1 + 10455 0.69 0.197756
Target:  5'- aUGCCG-GCGGCGGuGGuggaGGCGCg- -3'
miRNA:   3'- -ACGGUaCGCCGUC-CCuaugCCGCGau -5'
245 5' -59.5 AC_000008.1 + 17251 0.69 0.197756
Target:  5'- uUGCCucaGCGGUGGcGGAUgccGCGGUGCa- -3'
miRNA:   3'- -ACGGua-CGCCGUC-CCUA---UGCCGCGau -5'
245 5' -59.5 AC_000008.1 + 8626 0.7 0.182103
Target:  5'- cGCCGggagagGgGGCAGGGGcacguCGGCGCc- -3'
miRNA:   3'- aCGGUa-----CgCCGUCCCUau---GCCGCGau -5'
245 5' -59.5 AC_000008.1 + 9580 1.06 0.000255
Target:  5'- cUGCCAUGCGGCAGGGAUACGGCGCUAa -3'
miRNA:   3'- -ACGGUACGCCGUCCCUAUGCCGCGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.