miRNA display CGI


Results 21 - 40 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24500 5' -51.2 NC_005264.1 + 30606 0.73 0.808904
Target:  5'- -gCAGCC-CGGCGACGGCGGCggcgaCGGa -3'
miRNA:   3'- uaGUUGGaGCUGUUGUUGUCGag---GCC- -5'
24500 5' -51.2 NC_005264.1 + 31933 0.68 0.966218
Target:  5'- -aCGGCCUCG-CGGCu-CGGCUCUGa -3'
miRNA:   3'- uaGUUGGAGCuGUUGuuGUCGAGGCc -5'
24500 5' -51.2 NC_005264.1 + 32777 0.69 0.9469
Target:  5'- aAUCAucGCCaCGGCAGCGACGG-UCUGGc -3'
miRNA:   3'- -UAGU--UGGaGCUGUUGUUGUCgAGGCC- -5'
24500 5' -51.2 NC_005264.1 + 33357 0.69 0.951244
Target:  5'- -cCGGCCuaUCGGCGGCGAUccGCUUCGGa -3'
miRNA:   3'- uaGUUGG--AGCUGUUGUUGu-CGAGGCC- -5'
24500 5' -51.2 NC_005264.1 + 35056 0.66 0.993655
Target:  5'- cGUCAGCCUaGACAACAACcuGGuCUUCu- -3'
miRNA:   3'- -UAGUUGGAgCUGUUGUUG--UC-GAGGcc -5'
24500 5' -51.2 NC_005264.1 + 35405 1.08 0.00975
Target:  5'- cAUCAACCUCGACAACAACAGCUCCGGc -3'
miRNA:   3'- -UAGUUGGAGCUGUUGUUGUCGAGGCC- -5'
24500 5' -51.2 NC_005264.1 + 35687 0.67 0.985888
Target:  5'- -cCGACCUCGGCGucuccuCAGCccGUUCCGa -3'
miRNA:   3'- uaGUUGGAGCUGUu-----GUUGu-CGAGGCc -5'
24500 5' -51.2 NC_005264.1 + 37083 0.71 0.909466
Target:  5'- -cUAGCgaCG-CGGCGGCAGUUCCGGg -3'
miRNA:   3'- uaGUUGgaGCuGUUGUUGUCGAGGCC- -5'
24500 5' -51.2 NC_005264.1 + 38205 0.7 0.937468
Target:  5'- -gCGGCC-CGAUA---GCGGCUCCGGu -3'
miRNA:   3'- uaGUUGGaGCUGUuguUGUCGAGGCC- -5'
24500 5' -51.2 NC_005264.1 + 39087 0.66 0.990373
Target:  5'- -cCGG-CUCGGCgGGCAGCGGCgUCUGGa -3'
miRNA:   3'- uaGUUgGAGCUG-UUGUUGUCG-AGGCC- -5'
24500 5' -51.2 NC_005264.1 + 41350 0.69 0.951244
Target:  5'- -gCAGCCgCGAaGGCc-CAGCUCCGGg -3'
miRNA:   3'- uaGUUGGaGCUgUUGuuGUCGAGGCC- -5'
24500 5' -51.2 NC_005264.1 + 44561 0.71 0.892426
Target:  5'- cGUCAaacGCCgugcugggUGACGACGagguguucgaguucgGCAGCUCCGGc -3'
miRNA:   3'- -UAGU---UGGa-------GCUGUUGU---------------UGUCGAGGCC- -5'
24500 5' -51.2 NC_005264.1 + 47712 0.7 0.937468
Target:  5'- -gCGAgCUCGGCAgGCGcCAGCUCaCGGa -3'
miRNA:   3'- uaGUUgGAGCUGU-UGUuGUCGAG-GCC- -5'
24500 5' -51.2 NC_005264.1 + 50342 0.7 0.932374
Target:  5'- cGUCGACCUUGuccuGCGGCAGCccUUCGGu -3'
miRNA:   3'- -UAGUUGGAGCugu-UGUUGUCG--AGGCC- -5'
24500 5' -51.2 NC_005264.1 + 53856 0.88 0.170958
Target:  5'- uGUCAAUCUCGuACAGCAACAGCUCCa- -3'
miRNA:   3'- -UAGUUGGAGC-UGUUGUUGUCGAGGcc -5'
24500 5' -51.2 NC_005264.1 + 55825 0.67 0.982108
Target:  5'- uUCAGCCggUGGCGGCG-CGGCUgaCUGGg -3'
miRNA:   3'- uAGUUGGa-GCUGUUGUuGUCGA--GGCC- -5'
24500 5' -51.2 NC_005264.1 + 57491 0.69 0.962825
Target:  5'- ---cACCUCGuGCAGCAGCcGC-CCGGu -3'
miRNA:   3'- uaguUGGAGC-UGUUGUUGuCGaGGCC- -5'
24500 5' -51.2 NC_005264.1 + 57698 0.66 0.991589
Target:  5'- cUCGACCgCGGCAuACAGC-GCUUCGu -3'
miRNA:   3'- uAGUUGGaGCUGU-UGUUGuCGAGGCc -5'
24500 5' -51.2 NC_005264.1 + 58130 0.68 0.969386
Target:  5'- -gCGACCUCGcGCAGCcgucuGguGCUCCGu -3'
miRNA:   3'- uaGUUGGAGC-UGUUGu----UguCGAGGCc -5'
24500 5' -51.2 NC_005264.1 + 58417 0.68 0.972337
Target:  5'- uUCGACaUCGGCGGCuucCAGCUCUGc -3'
miRNA:   3'- uAGUUGgAGCUGUUGuu-GUCGAGGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.