Results 21 - 40 of 99 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24500 | 5' | -51.2 | NC_005264.1 | + | 22855 | 0.66 | 0.991589 |
Target: 5'- cGUCGuCCUCccuGACAcgucgaggguucGCAGCAuCUCCGGg -3' miRNA: 3'- -UAGUuGGAG---CUGU------------UGUUGUcGAGGCC- -5' |
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24500 | 5' | -51.2 | NC_005264.1 | + | 57698 | 0.66 | 0.991589 |
Target: 5'- cUCGACCgCGGCAuACAGC-GCUUCGu -3' miRNA: 3'- uAGUUGGaGCUGU-UGUUGuCGAGGCc -5' |
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24500 | 5' | -51.2 | NC_005264.1 | + | 19174 | 0.66 | 0.991589 |
Target: 5'- -aCAACCagGAU---GAUGGCUCCGGg -3' miRNA: 3'- uaGUUGGagCUGuugUUGUCGAGGCC- -5' |
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24500 | 5' | -51.2 | NC_005264.1 | + | 127815 | 0.66 | 0.990373 |
Target: 5'- cGUCGGCCagGACGGcCAGC-GCUCCu- -3' miRNA: 3'- -UAGUUGGagCUGUU-GUUGuCGAGGcc -5' |
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24500 | 5' | -51.2 | NC_005264.1 | + | 158114 | 0.66 | 0.990373 |
Target: 5'- -cCGG-CUCGGCgGGCAGCGGCgUCUGGa -3' miRNA: 3'- uaGUUgGAGCUG-UUGUUGUCG-AGGCC- -5' |
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24500 | 5' | -51.2 | NC_005264.1 | + | 115526 | 0.66 | 0.990373 |
Target: 5'- ---cGCCUCGACGcgGGCAGUUCCc- -3' miRNA: 3'- uaguUGGAGCUGUugUUGUCGAGGcc -5' |
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24500 | 5' | -51.2 | NC_005264.1 | + | 8789 | 0.66 | 0.990373 |
Target: 5'- cGUCGGCCagGACGGcCAGC-GCUCCu- -3' miRNA: 3'- -UAGUUGGagCUGUU-GUUGuCGAGGcc -5' |
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24500 | 5' | -51.2 | NC_005264.1 | + | 39087 | 0.66 | 0.990373 |
Target: 5'- -cCGG-CUCGGCgGGCAGCGGCgUCUGGa -3' miRNA: 3'- uaGUUgGAGCUG-UUGUUGUCG-AGGCC- -5' |
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24500 | 5' | -51.2 | NC_005264.1 | + | 96699 | 0.66 | 0.989024 |
Target: 5'- uGUCcGCCUCu-UAACAGCGG-UCCGGu -3' miRNA: 3'- -UAGuUGGAGcuGUUGUUGUCgAGGCC- -5' |
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24500 | 5' | -51.2 | NC_005264.1 | + | 137538 | 0.66 | 0.989024 |
Target: 5'- gGUCGGCCUCGGCGACGuggUAGgUCa-- -3' miRNA: 3'- -UAGUUGGAGCUGUUGUu--GUCgAGgcc -5' |
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24500 | 5' | -51.2 | NC_005264.1 | + | 151892 | 0.67 | 0.987532 |
Target: 5'- cAUCAGCUguaugUGGCGgaggggACGGCGGCUCCa- -3' miRNA: 3'- -UAGUUGGa----GCUGU------UGUUGUCGAGGcc -5' |
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24500 | 5' | -51.2 | NC_005264.1 | + | 98034 | 0.67 | 0.987532 |
Target: 5'- uUCAGCCUCGcggcaauuaACGGCAACucGUUCCu- -3' miRNA: 3'- uAGUUGGAGC---------UGUUGUUGu-CGAGGcc -5' |
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24500 | 5' | -51.2 | NC_005264.1 | + | 112969 | 0.67 | 0.987532 |
Target: 5'- uUUAGCCaaUCGGu--CAGCAGCUCCGc -3' miRNA: 3'- uAGUUGG--AGCUguuGUUGUCGAGGCc -5' |
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24500 | 5' | -51.2 | NC_005264.1 | + | 118925 | 0.67 | 0.987374 |
Target: 5'- cUCGACgUCGA-GGCGACGGCcgcgcucaucgucUCCGGc -3' miRNA: 3'- uAGUUGgAGCUgUUGUUGUCG-------------AGGCC- -5' |
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24500 | 5' | -51.2 | NC_005264.1 | + | 35687 | 0.67 | 0.985888 |
Target: 5'- -cCGACCUCGGCGucuccuCAGCccGUUCCGa -3' miRNA: 3'- uaGUUGGAGCUGUu-----GUUGu-CGAGGCc -5' |
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24500 | 5' | -51.2 | NC_005264.1 | + | 154713 | 0.67 | 0.985888 |
Target: 5'- -cCGACCUCGGCGucuccuCAGCccGUUCCGa -3' miRNA: 3'- uaGUUGGAGCUGUu-----GUUGu-CGAGGCc -5' |
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24500 | 5' | -51.2 | NC_005264.1 | + | 95352 | 0.67 | 0.984083 |
Target: 5'- -aCGGaCUCGGCGggGCGGCGGC-CCGGc -3' miRNA: 3'- uaGUUgGAGCUGU--UGUUGUCGaGGCC- -5' |
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24500 | 5' | -51.2 | NC_005264.1 | + | 83844 | 0.67 | 0.984083 |
Target: 5'- -gCAACCUCGGCAgguaACuccuUAGUUUCGGc -3' miRNA: 3'- uaGUUGGAGCUGU----UGuu--GUCGAGGCC- -5' |
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24500 | 5' | -51.2 | NC_005264.1 | + | 55825 | 0.67 | 0.982108 |
Target: 5'- uUCAGCCggUGGCGGCG-CGGCUgaCUGGg -3' miRNA: 3'- uAGUUGGa-GCUGUUGUuGUCGA--GGCC- -5' |
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24500 | 5' | -51.2 | NC_005264.1 | + | 21202 | 0.67 | 0.982108 |
Target: 5'- cGUCGGCCgcagugguacuuUCGGCcGCGACGGCuuUCCGc -3' miRNA: 3'- -UAGUUGG------------AGCUGuUGUUGUCG--AGGCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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