miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24501 5' -60.2 NC_005264.1 + 70696 0.66 0.760739
Target:  5'- -cGcCCGCGGGCGacaGCGCgaagaCGGAGAcuGGAg -3'
miRNA:   3'- caC-GGCGCUCGC---CGCGa----GCUUCU--CCU- -5'
24501 5' -60.2 NC_005264.1 + 116966 0.66 0.760739
Target:  5'- gGUGUCGCuugcauuGGCGGCGCgcagacUCGAAGucuuGGGg -3'
miRNA:   3'- -CACGGCGc------UCGCCGCG------AGCUUCu---CCU- -5'
24501 5' -60.2 NC_005264.1 + 97182 0.66 0.760739
Target:  5'- uUGCCGcCGAgGCGGacaaGCUCuacGAGGAc -3'
miRNA:   3'- cACGGC-GCU-CGCCg---CGAGcuuCUCCU- -5'
24501 5' -60.2 NC_005264.1 + 151852 0.66 0.760739
Target:  5'- -cGCCGCuccGGCGGCGacaCGuGGGGGGc -3'
miRNA:   3'- caCGGCGc--UCGCCGCga-GCuUCUCCU- -5'
24501 5' -60.2 NC_005264.1 + 109906 0.66 0.757961
Target:  5'- -cGCCGCGGGCG-CGgccaugcaaugcccCUCGAAGuGGc -3'
miRNA:   3'- caCGGCGCUCGCcGC--------------GAGCUUCuCCu -5'
24501 5' -60.2 NC_005264.1 + 1393 0.66 0.751444
Target:  5'- --uCCGgGAGUGGCGaggacaGAGGGGGAa -3'
miRNA:   3'- cacGGCgCUCGCCGCgag---CUUCUCCU- -5'
24501 5' -60.2 NC_005264.1 + 18041 0.66 0.751444
Target:  5'- cGUGCCGaCGcgaagcGGCGGCGCcgCGAGccAGGGc -3'
miRNA:   3'- -CACGGC-GC------UCGCCGCGa-GCUUc-UCCU- -5'
24501 5' -60.2 NC_005264.1 + 120420 0.66 0.751444
Target:  5'- --uCCGgGAGUGGCGaggacaGAGGGGGAa -3'
miRNA:   3'- cacGGCgCUCGCCGCgag---CUUCUCCU- -5'
24501 5' -60.2 NC_005264.1 + 123761 0.66 0.751444
Target:  5'- cUGcCCGcCGAGcCGGCGUcCGggGGuGGAc -3'
miRNA:   3'- cAC-GGC-GCUC-GCCGCGaGCuuCU-CCU- -5'
24501 5' -60.2 NC_005264.1 + 4735 0.66 0.751444
Target:  5'- cUGcCCGcCGAGcCGGCGUcCGggGGuGGAc -3'
miRNA:   3'- cAC-GGC-GCUC-GCCGCGaGCuuCU-CCU- -5'
24501 5' -60.2 NC_005264.1 + 79022 0.66 0.742049
Target:  5'- -gGCCGauaaGAauGCGGCGUggaggCGAGGAGuGAc -3'
miRNA:   3'- caCGGCg---CU--CGCCGCGa----GCUUCUC-CU- -5'
24501 5' -60.2 NC_005264.1 + 126963 0.66 0.732565
Target:  5'- cUGCCGCGAGaCGa-GC-CGGAGGGGc -3'
miRNA:   3'- cACGGCGCUC-GCcgCGaGCUUCUCCu -5'
24501 5' -60.2 NC_005264.1 + 7937 0.66 0.732565
Target:  5'- cUGCCGCGAGaCGa-GC-CGGAGGGGc -3'
miRNA:   3'- cACGGCGCUC-GCcgCGaGCUUCUCCu -5'
24501 5' -60.2 NC_005264.1 + 25597 0.66 0.731612
Target:  5'- -gGCCGCcggacgaGAGCGGCGagaCGAAGAuGAu -3'
miRNA:   3'- caCGGCG-------CUCGCCGCga-GCUUCUcCU- -5'
24501 5' -60.2 NC_005264.1 + 25713 0.66 0.726834
Target:  5'- uUGgCGCGGGCGGCagcggugcguacucgGUcgCGGAGAGGc -3'
miRNA:   3'- cACgGCGCUCGCCG---------------CGa-GCUUCUCCu -5'
24501 5' -60.2 NC_005264.1 + 37778 0.66 0.722998
Target:  5'- -aGCUcaaggacucgagGCGAGCGGCGga-GAAGAGGc -3'
miRNA:   3'- caCGG------------CGCUCGCCGCgagCUUCUCCu -5'
24501 5' -60.2 NC_005264.1 + 98222 0.66 0.713358
Target:  5'- -cGgCGuCGGGCcGCGCUgCGGAGAGGu -3'
miRNA:   3'- caCgGC-GCUCGcCGCGA-GCUUCUCCu -5'
24501 5' -60.2 NC_005264.1 + 87977 0.66 0.713358
Target:  5'- --aCCGCGGuGCGGUaaacCUCGggGAGGu -3'
miRNA:   3'- cacGGCGCU-CGCCGc---GAGCuuCUCCu -5'
24501 5' -60.2 NC_005264.1 + 129495 0.66 0.713358
Target:  5'- uUGCgGCGgcgcaggguuuGGCGGCGC-CGGAGGcgacGGAa -3'
miRNA:   3'- cACGgCGC-----------UCGCCGCGaGCUUCU----CCU- -5'
24501 5' -60.2 NC_005264.1 + 92648 0.67 0.703652
Target:  5'- cUGCCGCGuGGCccucGCGC-CGcaAAGAGGAg -3'
miRNA:   3'- cACGGCGC-UCGc---CGCGaGC--UUCUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.