Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24503 | 5' | -53.7 | NC_005264.1 | + | 151495 | 1.1 | 0.004485 |
Target: 5'- cCAGAUGGCAGUUCCUCGCCAGAACGGu -3' miRNA: 3'- -GUCUACCGUCAAGGAGCGGUCUUGCC- -5' |
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24503 | 5' | -53.7 | NC_005264.1 | + | 32468 | 1.1 | 0.004485 |
Target: 5'- cCAGAUGGCAGUUCCUCGCCAGAACGGu -3' miRNA: 3'- -GUCUACCGUCAAGGAGCGGUCUUGCC- -5' |
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24503 | 5' | -53.7 | NC_005264.1 | + | 11376 | 0.81 | 0.314336 |
Target: 5'- -cGGUGGCAGUUCCUCGCCuauccugcagagGGAGUGGc -3' miRNA: 3'- guCUACCGUCAAGGAGCGG------------UCUUGCC- -5' |
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24503 | 5' | -53.7 | NC_005264.1 | + | 130403 | 0.81 | 0.314336 |
Target: 5'- -cGGUGGCAGUUCCUCGCCuauccugcagagGGAGUGGc -3' miRNA: 3'- guCUACCGUCAAGGAGCGG------------UCUUGCC- -5' |
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24503 | 5' | -53.7 | NC_005264.1 | + | 11448 | 0.72 | 0.746044 |
Target: 5'- ----cGGCA--UCCUCGCCAGAACa- -3' miRNA: 3'- gucuaCCGUcaAGGAGCGGUCUUGcc -5' |
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24503 | 5' | -53.7 | NC_005264.1 | + | 130475 | 0.72 | 0.746044 |
Target: 5'- ----cGGCA--UCCUCGCCAGAACa- -3' miRNA: 3'- gucuaCCGUcaAGGAGCGGUCUUGcc -5' |
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24503 | 5' | -53.7 | NC_005264.1 | + | 45576 | 0.72 | 0.769153 |
Target: 5'- aUAGGUGGCAcgagaccgcggucucGUUCUccgcaUCGCCGGGGCGa -3' miRNA: 3'- -GUCUACCGU---------------CAAGG-----AGCGGUCUUGCc -5' |
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24503 | 5' | -53.7 | NC_005264.1 | + | 131995 | 0.71 | 0.811342 |
Target: 5'- -cGGUGGCGGUgggCCgaccggCGCCAGAuuACGu -3' miRNA: 3'- guCUACCGUCAa--GGa-----GCGGUCU--UGCc -5' |
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24503 | 5' | -53.7 | NC_005264.1 | + | 162543 | 0.7 | 0.828645 |
Target: 5'- gGGAUGGUAuacccagcGcUCUUCGCCAGAAUGa -3' miRNA: 3'- gUCUACCGU--------CaAGGAGCGGUCUUGCc -5' |
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24503 | 5' | -53.7 | NC_005264.1 | + | 126278 | 0.7 | 0.868598 |
Target: 5'- aGGAcuUGGCGGaggUCggCGCCAGGACGa -3' miRNA: 3'- gUCU--ACCGUCa--AGgaGCGGUCUUGCc -5' |
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24503 | 5' | -53.7 | NC_005264.1 | + | 7251 | 0.7 | 0.868598 |
Target: 5'- aGGAcuUGGCGGaggUCggCGCCAGGACGa -3' miRNA: 3'- gUCU--ACCGUCa--AGgaGCGGUCUUGCc -5' |
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24503 | 5' | -53.7 | NC_005264.1 | + | 7886 | 0.69 | 0.875967 |
Target: 5'- cCAGAUgcGGCgucggaGGUcUCCUCGCCGGAGuacUGGg -3' miRNA: 3'- -GUCUA--CCG------UCA-AGGAGCGGUCUU---GCC- -5' |
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24503 | 5' | -53.7 | NC_005264.1 | + | 31772 | 0.69 | 0.875967 |
Target: 5'- gGGAUGGUucgcgGGcgCUUCGCCuaAGGGCGGc -3' miRNA: 3'- gUCUACCG-----UCaaGGAGCGG--UCUUGCC- -5' |
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24503 | 5' | -53.7 | NC_005264.1 | + | 150798 | 0.69 | 0.875967 |
Target: 5'- gGGAUGGUucgcgGGcgCUUCGCCuaAGGGCGGc -3' miRNA: 3'- gUCUACCG-----UCaaGGAGCGG--UCUUGCC- -5' |
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24503 | 5' | -53.7 | NC_005264.1 | + | 126912 | 0.69 | 0.875967 |
Target: 5'- cCAGAUgcGGCgucggaGGUcUCCUCGCCGGAGuacUGGg -3' miRNA: 3'- -GUCUA--CCG------UCA-AGGAGCGGUCUU---GCC- -5' |
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24503 | 5' | -53.7 | NC_005264.1 | + | 33859 | 0.69 | 0.883114 |
Target: 5'- aCGGGUccGGCAGUcCCUCGCCG--GCGu -3' miRNA: 3'- -GUCUA--CCGUCAaGGAGCGGUcuUGCc -5' |
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24503 | 5' | -53.7 | NC_005264.1 | + | 152885 | 0.69 | 0.883114 |
Target: 5'- aCGGGUccGGCAGUcCCUCGCCG--GCGu -3' miRNA: 3'- -GUCUA--CCGUCAaGGAGCGGUcuUGCc -5' |
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24503 | 5' | -53.7 | NC_005264.1 | + | 92495 | 0.69 | 0.883114 |
Target: 5'- -cGGUGGCGGUgcgCCUgGCCaucuguGGAuccGCGGa -3' miRNA: 3'- guCUACCGUCAa--GGAgCGG------UCU---UGCC- -5' |
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24503 | 5' | -53.7 | NC_005264.1 | + | 76885 | 0.69 | 0.902547 |
Target: 5'- gAGAUGGaCAaUUCUccguacaUUGCCGGGACGGu -3' miRNA: 3'- gUCUACC-GUcAAGG-------AGCGGUCUUGCC- -5' |
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24503 | 5' | -53.7 | NC_005264.1 | + | 13502 | 0.68 | 0.926616 |
Target: 5'- gGGAUGGCGGUaaaUCGuCCAacucGAACGGc -3' miRNA: 3'- gUCUACCGUCAaggAGC-GGU----CUUGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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