miRNA display CGI


Results 21 - 40 of 203 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24507 3' -57.9 NC_005264.1 + 69403 0.66 0.835872
Target:  5'- gGGCGG-GuAGGCGCgCCUGCcGCCGu- -3'
miRNA:   3'- aCCGCCgC-UUUGCG-GGAUGaCGGUcg -5'
24507 3' -57.9 NC_005264.1 + 91509 0.66 0.835872
Target:  5'- cGGCGGCGuaGAAUGCCgCgcACUcGCCaAGUu -3'
miRNA:   3'- aCCGCCGC--UUUGCGG-Ga-UGA-CGG-UCG- -5'
24507 3' -57.9 NC_005264.1 + 136339 0.66 0.835056
Target:  5'- -cGCGGgGAGagauauuauacggGCGCUgggcGCUGCCGGCg -3'
miRNA:   3'- acCGCCgCUU-------------UGCGGga--UGACGGUCG- -5'
24507 3' -57.9 NC_005264.1 + 103738 0.66 0.830949
Target:  5'- cGGCGGCGGc-CGCCaUGCUuagguucaugcugagGCgGGCg -3'
miRNA:   3'- aCCGCCGCUuuGCGGgAUGA---------------CGgUCG- -5'
24507 3' -57.9 NC_005264.1 + 45656 0.66 0.827631
Target:  5'- cGGCGGCuAGGCGCCaaGC-GCagugaAGCa -3'
miRNA:   3'- aCCGCCGcUUUGCGGgaUGaCGg----UCG- -5'
24507 3' -57.9 NC_005264.1 + 54228 0.66 0.827631
Target:  5'- cGGCGGcCGguGCGUUCacgcuagGCUGCUAGa -3'
miRNA:   3'- aCCGCC-GCuuUGCGGGa------UGACGGUCg -5'
24507 3' -57.9 NC_005264.1 + 120170 0.66 0.827631
Target:  5'- gGGCGcaCGGGACGaUCCggccgccaguCUGCCGGCg -3'
miRNA:   3'- aCCGCc-GCUUUGC-GGGau--------GACGGUCG- -5'
24507 3' -57.9 NC_005264.1 + 148511 0.66 0.827631
Target:  5'- uUGGCGGCG-AGCGCCgcggaagaaaUUugUGUgaUGGCg -3'
miRNA:   3'- -ACCGCCGCuUUGCGG----------GAugACG--GUCG- -5'
24507 3' -57.9 NC_005264.1 + 75234 0.66 0.827631
Target:  5'- gGcGCGGCcAGGuCGUCCgcguUUGCCGGCa -3'
miRNA:   3'- aC-CGCCGcUUU-GCGGGau--GACGGUCG- -5'
24507 3' -57.9 NC_005264.1 + 1143 0.66 0.827631
Target:  5'- gGGCGcaCGGGACGaUCCggccgccaguCUGCCGGCg -3'
miRNA:   3'- aCCGCc-GCUUUGC-GGGau--------GACGGUCG- -5'
24507 3' -57.9 NC_005264.1 + 20140 0.66 0.827631
Target:  5'- gGGCaGGCGAuGGCGCgCC----GCCGGCg -3'
miRNA:   3'- aCCG-CCGCU-UUGCG-GGaugaCGGUCG- -5'
24507 3' -57.9 NC_005264.1 + 96281 0.66 0.827631
Target:  5'- gUGGCGGCGGAGCuuguggaaaucGCCg-AC-GCCcGCa -3'
miRNA:   3'- -ACCGCCGCUUUG-----------CGGgaUGaCGGuCG- -5'
24507 3' -57.9 NC_005264.1 + 57168 0.66 0.827631
Target:  5'- cGGCGG-GAGACGCCgUGuuguucugauCUGaCGGCc -3'
miRNA:   3'- aCCGCCgCUUUGCGGgAU----------GACgGUCG- -5'
24507 3' -57.9 NC_005264.1 + 93983 0.66 0.819216
Target:  5'- cUGGUGGCGGAAgauaCCCUucaucgGCUGCCGu- -3'
miRNA:   3'- -ACCGCCGCUUUgc--GGGA------UGACGGUcg -5'
24507 3' -57.9 NC_005264.1 + 20331 0.66 0.819216
Target:  5'- gGGCaccGGCaagcagGAAACGCgCCg--UGCCAGCg -3'
miRNA:   3'- aCCG---CCG------CUUUGCG-GGaugACGGUCG- -5'
24507 3' -57.9 NC_005264.1 + 144419 0.66 0.819216
Target:  5'- cGcCGaGCGAGaggGCGCgCCUGC-GCCGGCc -3'
miRNA:   3'- aCcGC-CGCUU---UGCG-GGAUGaCGGUCG- -5'
24507 3' -57.9 NC_005264.1 + 151860 0.66 0.819216
Target:  5'- cGGCGGCGAcacguggggGGCGUCUU-C-GCgGGCa -3'
miRNA:   3'- aCCGCCGCU---------UUGCGGGAuGaCGgUCG- -5'
24507 3' -57.9 NC_005264.1 + 109235 0.66 0.819216
Target:  5'- aUGGaUGGCGGAuuACGCgCUGCugUGCCAcaaaacGCa -3'
miRNA:   3'- -ACC-GCCGCUU--UGCGgGAUG--ACGGU------CG- -5'
24507 3' -57.9 NC_005264.1 + 122160 0.66 0.819216
Target:  5'- -cGCGuGCucGACGCCgaACggcGCCAGCg -3'
miRNA:   3'- acCGC-CGcuUUGCGGgaUGa--CGGUCG- -5'
24507 3' -57.9 NC_005264.1 + 55451 0.66 0.819216
Target:  5'- gGGUGGuCGAuuCGUCCUcAUcGUCGGCg -3'
miRNA:   3'- aCCGCC-GCUuuGCGGGA-UGaCGGUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.