miRNA display CGI


Results 1 - 20 of 44 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24508 3' -61.3 NC_005264.1 + 140682 0.66 0.739663
Target:  5'- uGACGuacGGCCCGCGGcgcaaucuaaggcgCGcGUCCGCuCGu -3'
miRNA:   3'- cUUGCu--CCGGGCGUCa-------------GC-CAGGCG-GC- -5'
24508 3' -61.3 NC_005264.1 + 98581 0.66 0.735933
Target:  5'- uGAACGGcGCCCGCagccccAGUauGUuuGCCGa -3'
miRNA:   3'- -CUUGCUcCGGGCG------UCAgcCAggCGGC- -5'
24508 3' -61.3 NC_005264.1 + 135159 0.66 0.735933
Target:  5'- cGGCGAGGCagaggccagCCGCGuaccUCGGUCCgagcGCCGc -3'
miRNA:   3'- cUUGCUCCG---------GGCGUc---AGCCAGG----CGGC- -5'
24508 3' -61.3 NC_005264.1 + 5035 0.66 0.72655
Target:  5'- -cACGAGGuUCCGC-GUCGuGggcgCCGCCu -3'
miRNA:   3'- cuUGCUCC-GGGCGuCAGC-Ca---GGCGGc -5'
24508 3' -61.3 NC_005264.1 + 104035 0.66 0.72655
Target:  5'- uGACGc-GCgCCGCGGaaaUCGGUuuGCCGa -3'
miRNA:   3'- cUUGCucCG-GGCGUC---AGCCAggCGGC- -5'
24508 3' -61.3 NC_005264.1 + 85059 0.66 0.717094
Target:  5'- -uACaAGGCCUGCcccGUUccccaGGUCCGCCGc -3'
miRNA:   3'- cuUGcUCCGGGCGu--CAG-----CCAGGCGGC- -5'
24508 3' -61.3 NC_005264.1 + 16486 0.66 0.717094
Target:  5'- -cGCGGuGGCCUGCggGGUCGaGgcaCGCCGg -3'
miRNA:   3'- cuUGCU-CCGGGCG--UCAGC-Cag-GCGGC- -5'
24508 3' -61.3 NC_005264.1 + 49371 0.66 0.707571
Target:  5'- cGAcCGuGGCacgaCCGCggGGUCGGUCCGaCCc -3'
miRNA:   3'- -CUuGCuCCG----GGCG--UCAGCCAGGC-GGc -5'
24508 3' -61.3 NC_005264.1 + 149860 0.66 0.707571
Target:  5'- cGAACG-GGCUCGCGucgucGUCGGcggcggcgcgCCGCCc -3'
miRNA:   3'- -CUUGCuCCGGGCGU-----CAGCCa---------GGCGGc -5'
24508 3' -61.3 NC_005264.1 + 30834 0.66 0.707571
Target:  5'- cGAACG-GGCUCGCGucgucGUCGGcggcggcgcgCCGCCc -3'
miRNA:   3'- -CUUGCuCCGGGCGU-----CAGCCa---------GGCGGc -5'
24508 3' -61.3 NC_005264.1 + 99046 0.66 0.69799
Target:  5'- aAGCGGGGCCUcCcccgAGUCGGuguuaUCCGUCGa -3'
miRNA:   3'- cUUGCUCCGGGcG----UCAGCC-----AGGCGGC- -5'
24508 3' -61.3 NC_005264.1 + 11003 0.66 0.69799
Target:  5'- gGAGCGGcGGCCC-CAGUCu-UCCGCUa -3'
miRNA:   3'- -CUUGCU-CCGGGcGUCAGccAGGCGGc -5'
24508 3' -61.3 NC_005264.1 + 9580 0.66 0.69799
Target:  5'- aAACGucGCCCGCAGUa-GUCCccccccaugcGCCGa -3'
miRNA:   3'- cUUGCucCGGGCGUCAgcCAGG----------CGGC- -5'
24508 3' -61.3 NC_005264.1 + 113454 0.66 0.697029
Target:  5'- aGAGCGGGGucggaccgacCCCGCGGUCgugccacGGUCgCGCg- -3'
miRNA:   3'- -CUUGCUCC----------GGGCGUCAG-------CCAG-GCGgc -5'
24508 3' -61.3 NC_005264.1 + 74274 0.66 0.692216
Target:  5'- aGGCGGGGCCUcauauggcagcauuaGCGG-CGGUCUGgCGc -3'
miRNA:   3'- cUUGCUCCGGG---------------CGUCaGCCAGGCgGC- -5'
24508 3' -61.3 NC_005264.1 + 144422 0.67 0.671891
Target:  5'- cGAGCGAGagggcgcGCCUGCgccggccggaacgguGGUCGuuGUCCGCCu -3'
miRNA:   3'- -CUUGCUC-------CGGGCG---------------UCAGC--CAGGCGGc -5'
24508 3' -61.3 NC_005264.1 + 125526 0.67 0.668975
Target:  5'- --uCGAgGGCCgGUAGcCGGUCUuGCCGu -3'
miRNA:   3'- cuuGCU-CCGGgCGUCaGCCAGG-CGGC- -5'
24508 3' -61.3 NC_005264.1 + 6499 0.67 0.668975
Target:  5'- --uCGAgGGCCgGUAGcCGGUCUuGCCGu -3'
miRNA:   3'- cuuGCU-CCGGgCGUCaGCCAGG-CGGC- -5'
24508 3' -61.3 NC_005264.1 + 136054 0.67 0.659239
Target:  5'- cGugGAaGCCCGCgugcaggaucgAGUCGGauaCCGCCGc -3'
miRNA:   3'- cUugCUcCGGGCG-----------UCAGCCa--GGCGGC- -5'
24508 3' -61.3 NC_005264.1 + 126029 0.67 0.639714
Target:  5'- cGGCGuGGCCCGCGG-CGGcUCCucuCCa -3'
miRNA:   3'- cUUGCuCCGGGCGUCaGCC-AGGc--GGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.