miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24511 3' -55.8 NC_005264.1 + 89969 0.66 0.929899
Target:  5'- aGCCgUGugGAaGcCUUGCACaCCUauGCCGa -3'
miRNA:   3'- -UGG-ACugCUaCuGAACGUG-GGG--UGGC- -5'
24511 3' -55.8 NC_005264.1 + 22049 0.66 0.929899
Target:  5'- gACC-GACGccuugGACgguaGCGCCgCCGCCGg -3'
miRNA:   3'- -UGGaCUGCua---CUGaa--CGUGG-GGUGGC- -5'
24511 3' -55.8 NC_005264.1 + 6563 0.66 0.924616
Target:  5'- cGCCUcguccACGGUGA--UGCGCCCCccagggGCCGa -3'
miRNA:   3'- -UGGAc----UGCUACUgaACGUGGGG------UGGC- -5'
24511 3' -55.8 NC_005264.1 + 125590 0.66 0.924616
Target:  5'- cGCCUcguccACGGUGA--UGCGCCCCccagggGCCGa -3'
miRNA:   3'- -UGGAc----UGCUACUgaACGUGGGG------UGGC- -5'
24511 3' -55.8 NC_005264.1 + 151774 0.66 0.919095
Target:  5'- uACgaGGCGGguACUUGCcccgccagGCCCCGCCu -3'
miRNA:   3'- -UGgaCUGCUacUGAACG--------UGGGGUGGc -5'
24511 3' -55.8 NC_005264.1 + 111029 0.66 0.91853
Target:  5'- uCCUGguucgaaGCGGUGGCUcGCGCggaCUCGCCGg -3'
miRNA:   3'- uGGAC-------UGCUACUGAaCGUG---GGGUGGC- -5'
24511 3' -55.8 NC_005264.1 + 98142 0.66 0.913338
Target:  5'- aACCUGAUucgGGCgaGCACggccugCCCGCCGg -3'
miRNA:   3'- -UGGACUGcuaCUGaaCGUG------GGGUGGC- -5'
24511 3' -55.8 NC_005264.1 + 11061 0.66 0.907345
Target:  5'- gGCCUGGCGG-GGCaaGUA-CCCGCCu -3'
miRNA:   3'- -UGGACUGCUaCUGaaCGUgGGGUGGc -5'
24511 3' -55.8 NC_005264.1 + 1878 0.67 0.894661
Target:  5'- aACCUGACucGUGGCagaaaGCuacagACCCCGCCGc -3'
miRNA:   3'- -UGGACUGc-UACUGaa---CG-----UGGGGUGGC- -5'
24511 3' -55.8 NC_005264.1 + 120904 0.67 0.894661
Target:  5'- aACCUGACucGUGGCagaaaGCuacagACCCCGCCGc -3'
miRNA:   3'- -UGGACUGc-UACUGaa---CG-----UGGGGUGGC- -5'
24511 3' -55.8 NC_005264.1 + 142603 0.67 0.894661
Target:  5'- gGCCgcGACGAUGGCcacgccggGCuACCUCGCCu -3'
miRNA:   3'- -UGGa-CUGCUACUGaa------CG-UGGGGUGGc -5'
24511 3' -55.8 NC_005264.1 + 133165 0.67 0.887976
Target:  5'- cACCggGACGAUcGACgcgGCAUCUgGCCa -3'
miRNA:   3'- -UGGa-CUGCUA-CUGaa-CGUGGGgUGGc -5'
24511 3' -55.8 NC_005264.1 + 75697 0.67 0.873938
Target:  5'- cGCCgucuuucgGcGCGAaGACUggUGCGCCCCGCgGg -3'
miRNA:   3'- -UGGa-------C-UGCUaCUGA--ACGUGGGGUGgC- -5'
24511 3' -55.8 NC_005264.1 + 91281 0.67 0.866595
Target:  5'- uCCUGAUGcgGAUgUGCacgaGCUCCGCCa -3'
miRNA:   3'- uGGACUGCuaCUGaACG----UGGGGUGGc -5'
24511 3' -55.8 NC_005264.1 + 148966 0.67 0.866595
Target:  5'- uAUCUG-CGAUG-UUUGCGCUCCAUCu -3'
miRNA:   3'- -UGGACuGCUACuGAACGUGGGGUGGc -5'
24511 3' -55.8 NC_005264.1 + 87712 0.68 0.843332
Target:  5'- cAUCUGACGcgcggccauuUGAC-UGCGCCCCagcucggcGCCGg -3'
miRNA:   3'- -UGGACUGCu---------ACUGaACGUGGGG--------UGGC- -5'
24511 3' -55.8 NC_005264.1 + 105438 0.68 0.832708
Target:  5'- gACUuuUGACGuccgcaucgcgaaucGGC-UGCGCCCCACCGa -3'
miRNA:   3'- -UGG--ACUGCua-------------CUGaACGUGGGGUGGC- -5'
24511 3' -55.8 NC_005264.1 + 95079 0.68 0.832708
Target:  5'- gGCCUGGCGAuaagcgacgcccUGAUuucgcugagagccuUUGCcccgaagccGCCCCACCa -3'
miRNA:   3'- -UGGACUGCU------------ACUG--------------AACG---------UGGGGUGGc -5'
24511 3' -55.8 NC_005264.1 + 157011 0.68 0.82686
Target:  5'- gGCCaGGCGAgUGGCggcCACCgCCGCCGg -3'
miRNA:   3'- -UGGaCUGCU-ACUGaacGUGG-GGUGGC- -5'
24511 3' -55.8 NC_005264.1 + 144191 0.68 0.82686
Target:  5'- gACCUcauuagcauACGGUGGgcgGCACCCCACCa -3'
miRNA:   3'- -UGGAc--------UGCUACUgaaCGUGGGGUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.