miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24511 5' -56.8 NC_005264.1 + 89181 0.66 0.912286
Target:  5'- ---aGUAGGGUcGUCCCGgCgGCAgGUg -3'
miRNA:   3'- cagcCAUCCCAuUAGGGC-GgCGUgCG- -5'
24511 5' -56.8 NC_005264.1 + 4110 0.66 0.910522
Target:  5'- -aCGGggccgAGGGU-GUCCCcucugccaaacacgGCCGCuuguCGCg -3'
miRNA:   3'- caGCCa----UCCCAuUAGGG--------------CGGCGu---GCG- -5'
24511 5' -56.8 NC_005264.1 + 123137 0.66 0.910522
Target:  5'- -aCGGggccgAGGGU-GUCCCcucugccaaacacgGCCGCuuguCGCg -3'
miRNA:   3'- caGCCa----UCCCAuUAGGG--------------CGGCGu---GCG- -5'
24511 5' -56.8 NC_005264.1 + 33582 0.66 0.900136
Target:  5'- cGUCGuucGGGUca-CCCGCgGCGCGUu -3'
miRNA:   3'- -CAGCcauCCCAuuaGGGCGgCGUGCG- -5'
24511 5' -56.8 NC_005264.1 + 17709 0.66 0.900136
Target:  5'- uGUCGGguguUAGGGaAAUUaccugcgCGCCGCgGCGCa -3'
miRNA:   3'- -CAGCC----AUCCCaUUAGg------GCGGCG-UGCG- -5'
24511 5' -56.8 NC_005264.1 + 152609 0.66 0.900136
Target:  5'- cGUCGuucGGGUca-CCCGCgGCGCGUu -3'
miRNA:   3'- -CAGCcauCCCAuuaGGGCGgCGUGCG- -5'
24511 5' -56.8 NC_005264.1 + 65623 0.66 0.900136
Target:  5'- -gCGGcucguGGGUA--CCCG-CGCGCGCa -3'
miRNA:   3'- caGCCau---CCCAUuaGGGCgGCGUGCG- -5'
24511 5' -56.8 NC_005264.1 + 153151 0.66 0.893722
Target:  5'- -cCGac-GGGU-AUCCCGUCGUAUGCu -3'
miRNA:   3'- caGCcauCCCAuUAGGGCGGCGUGCG- -5'
24511 5' -56.8 NC_005264.1 + 19287 0.66 0.887086
Target:  5'- aGUCGGgggAGGGUAGgaaaCaaGUCGCACa- -3'
miRNA:   3'- -CAGCCa--UCCCAUUa---GggCGGCGUGcg -5'
24511 5' -56.8 NC_005264.1 + 64382 0.66 0.887086
Target:  5'- -cCGGccGGGUugacaAAUCCCGCCGa--GCu -3'
miRNA:   3'- caGCCauCCCA-----UUAGGGCGGCgugCG- -5'
24511 5' -56.8 NC_005264.1 + 83014 0.66 0.887086
Target:  5'- uGUUGG-AGGGgcauGUUUCGUCGC-CGCa -3'
miRNA:   3'- -CAGCCaUCCCau--UAGGGCGGCGuGCG- -5'
24511 5' -56.8 NC_005264.1 + 139148 0.66 0.887086
Target:  5'- gGUCGGUcGGcGU--UCCCGCaCGUcgAUGCg -3'
miRNA:   3'- -CAGCCAuCC-CAuuAGGGCG-GCG--UGCG- -5'
24511 5' -56.8 NC_005264.1 + 60900 0.66 0.880232
Target:  5'- -gCGGUGGGGccgaCgCCGCCaguuucGCGCGCc -3'
miRNA:   3'- caGCCAUCCCauuaG-GGCGG------CGUGCG- -5'
24511 5' -56.8 NC_005264.1 + 56691 0.66 0.880232
Target:  5'- --aGGUGuucGGUAAggCUCGCCGCGCGa -3'
miRNA:   3'- cagCCAUc--CCAUUa-GGGCGGCGUGCg -5'
24511 5' -56.8 NC_005264.1 + 105321 0.67 0.873164
Target:  5'- --aGGagaaAGGGgcAaugagcucUCgCCGCCGCGCGCg -3'
miRNA:   3'- cagCCa---UCCCauU--------AG-GGCGGCGUGCG- -5'
24511 5' -56.8 NC_005264.1 + 55124 0.67 0.865887
Target:  5'- -aCG--AGGGUucgacacCCCGCCGUGCGCu -3'
miRNA:   3'- caGCcaUCCCAuua----GGGCGGCGUGCG- -5'
24511 5' -56.8 NC_005264.1 + 108395 0.67 0.865887
Target:  5'- cUCGGcGGuGGgcAUCCC-CCGCGCcaGCa -3'
miRNA:   3'- cAGCCaUC-CCauUAGGGcGGCGUG--CG- -5'
24511 5' -56.8 NC_005264.1 + 54001 0.67 0.865887
Target:  5'- -cUGGaUAGGGUAAUCCCagaGCaagaGCuCGCu -3'
miRNA:   3'- caGCC-AUCCCAUUAGGG---CGg---CGuGCG- -5'
24511 5' -56.8 NC_005264.1 + 2817 0.67 0.865887
Target:  5'- aUUGGUgccacagcauccAGGugagAGUCUCGUCGCACGCc -3'
miRNA:   3'- cAGCCA------------UCCca--UUAGGGCGGCGUGCG- -5'
24511 5' -56.8 NC_005264.1 + 78505 0.67 0.849948
Target:  5'- -aCGGUGuuggcaccgcgcuGGGUA--CgCGCCGCugGCg -3'
miRNA:   3'- caGCCAU-------------CCCAUuaGgGCGGCGugCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.