miRNA display CGI


Results 1 - 20 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24512 3' -53.3 NC_005264.1 + 154482 0.66 0.977832
Target:  5'- gUGGCGaggaggaaGCCACGGUuAAgGUCugcgGGGCg -3'
miRNA:   3'- gACCGC--------UGGUGUCG-UUgCAGua--CUCG- -5'
24512 3' -53.3 NC_005264.1 + 77402 0.66 0.977832
Target:  5'- -gGGcCGGCCcgcauauggAUAGCGACGaCGUGAGg -3'
miRNA:   3'- gaCC-GCUGG---------UGUCGUUGCaGUACUCg -5'
24512 3' -53.3 NC_005264.1 + 33846 0.66 0.977832
Target:  5'- cCUGcGCG-CCGCGGCAgagcugaagaACGUg--GAGCg -3'
miRNA:   3'- -GAC-CGCuGGUGUCGU----------UGCAguaCUCG- -5'
24512 3' -53.3 NC_005264.1 + 108373 0.66 0.977832
Target:  5'- -gGGCGACgACGGCccuuaccagcucGGCG--GUGGGCa -3'
miRNA:   3'- gaCCGCUGgUGUCG------------UUGCagUACUCG- -5'
24512 3' -53.3 NC_005264.1 + 98222 0.66 0.977832
Target:  5'- -cGGCGucggGCCGCGcuGCGGagagGUUAUGGGCg -3'
miRNA:   3'- gaCCGC----UGGUGU--CGUUg---CAGUACUCG- -5'
24512 3' -53.3 NC_005264.1 + 85989 0.66 0.975351
Target:  5'- uUGGUGACCGC-GC--UGUUgAUGGGCa -3'
miRNA:   3'- gACCGCUGGUGuCGuuGCAG-UACUCG- -5'
24512 3' -53.3 NC_005264.1 + 88838 0.66 0.975351
Target:  5'- -cGGCGACCGCAuguaCAACGcUCGgcgcGGGUu -3'
miRNA:   3'- gaCCGCUGGUGUc---GUUGC-AGUa---CUCG- -5'
24512 3' -53.3 NC_005264.1 + 5517 0.66 0.975351
Target:  5'- uUGGCcuGAUgACAGCcgcGGCGUCucgcgcgGAGCg -3'
miRNA:   3'- gACCG--CUGgUGUCG---UUGCAGua-----CUCG- -5'
24512 3' -53.3 NC_005264.1 + 116971 0.66 0.975351
Target:  5'- gUGGCGGCCgagacuacuaugGCGGCGGagUGUCGUuGGUg -3'
miRNA:   3'- gACCGCUGG------------UGUCGUU--GCAGUAcUCG- -5'
24512 3' -53.3 NC_005264.1 + 102578 0.66 0.975351
Target:  5'- -cGGCGcucACCGCAGCu-CG-CGUGAccGCa -3'
miRNA:   3'- gaCCGC---UGGUGUCGuuGCaGUACU--CG- -5'
24512 3' -53.3 NC_005264.1 + 137537 0.66 0.975351
Target:  5'- -aGGuCGGCCuCGGCGACGUgGUaGGUc -3'
miRNA:   3'- gaCC-GCUGGuGUCGUUGCAgUAcUCG- -5'
24512 3' -53.3 NC_005264.1 + 95794 0.66 0.972674
Target:  5'- -aGGCGcuuCCGCcGCuuACGUCggGGGCc -3'
miRNA:   3'- gaCCGCu--GGUGuCGu-UGCAGuaCUCG- -5'
24512 3' -53.3 NC_005264.1 + 53070 0.66 0.972674
Target:  5'- -aGGUGGCCGCGGaccCAGCGg---GAGUg -3'
miRNA:   3'- gaCCGCUGGUGUC---GUUGCaguaCUCG- -5'
24512 3' -53.3 NC_005264.1 + 18132 0.66 0.972674
Target:  5'- gUGGuCGACCGCAuugccguggucGCAAcuguCGUCGUcGGCg -3'
miRNA:   3'- gACC-GCUGGUGU-----------CGUU----GCAGUAcUCG- -5'
24512 3' -53.3 NC_005264.1 + 3675 0.66 0.972674
Target:  5'- -gGGCGGCCGucuCGGCGGCGagAcGAGg -3'
miRNA:   3'- gaCCGCUGGU---GUCGUUGCagUaCUCg -5'
24512 3' -53.3 NC_005264.1 + 122702 0.66 0.972674
Target:  5'- -gGGCGGCCGucuCGGCGGCGagAcGAGg -3'
miRNA:   3'- gaCCGCUGGU---GUCGUUGCagUaCUCg -5'
24512 3' -53.3 NC_005264.1 + 59537 0.66 0.972674
Target:  5'- gUGGCGAgguagaguuCaguaGCAGCAcgGCGUCG-GGGCu -3'
miRNA:   3'- gACCGCU---------Gg---UGUCGU--UGCAGUaCUCG- -5'
24512 3' -53.3 NC_005264.1 + 3151 0.66 0.972395
Target:  5'- cCUGGCGGCaaccgaaACGGCGacccuccGCGUCGcGAcgGCg -3'
miRNA:   3'- -GACCGCUGg------UGUCGU-------UGCAGUaCU--CG- -5'
24512 3' -53.3 NC_005264.1 + 122178 0.66 0.972395
Target:  5'- cCUGGCGGCaaccgaaACGGCGacccuccGCGUCGcGAcgGCg -3'
miRNA:   3'- -GACCGCUGg------UGUCGU-------UGCAGUaCU--CG- -5'
24512 3' -53.3 NC_005264.1 + 30842 0.66 0.971831
Target:  5'- uCUGGCGccggucggcccaccGCCAcCGGCcuguCGUCGcGAGCc -3'
miRNA:   3'- -GACCGC--------------UGGU-GUCGuu--GCAGUaCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.