miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24512 5' -62.7 NC_005264.1 + 54525 0.66 0.625446
Target:  5'- cUGCGCCGGGcauGCCaguaGUGUuCGCCGc -3'
miRNA:   3'- aACGCGGCCCccuUGG----CACGuGCGGU- -5'
24512 5' -62.7 NC_005264.1 + 115887 0.66 0.625446
Target:  5'- -cGCcacCCGGGGG-GCCaGUGagcaACGCCAa -3'
miRNA:   3'- aaCGc--GGCCCCCuUGG-CACg---UGCGGU- -5'
24512 5' -62.7 NC_005264.1 + 160120 0.66 0.625446
Target:  5'- -cGCGCCuGGGGGcAgUGcUGCAuUGCCAu -3'
miRNA:   3'- aaCGCGG-CCCCCuUgGC-ACGU-GCGGU- -5'
24512 5' -62.7 NC_005264.1 + 10091 0.66 0.625446
Target:  5'- --cCGCCGGGGGcaucgcGGCCGUGUcCGUg- -3'
miRNA:   3'- aacGCGGCCCCC------UUGGCACGuGCGgu -5'
24512 5' -62.7 NC_005264.1 + 91415 0.66 0.61559
Target:  5'- -aGCGCCGGGgcaccggcGGAGuCUGUGuCAUaGCCAc -3'
miRNA:   3'- aaCGCGGCCC--------CCUU-GGCAC-GUG-CGGU- -5'
24512 5' -62.7 NC_005264.1 + 16572 0.66 0.61559
Target:  5'- -gGCGCCGGGGcGGCgGcGCACaugacuccgGCCGa -3'
miRNA:   3'- aaCGCGGCCCCcUUGgCaCGUG---------CGGU- -5'
24512 5' -62.7 NC_005264.1 + 149927 0.66 0.605745
Target:  5'- -cGCGUCGGGGGAggacugcgagGCCGgGCG-GCUc -3'
miRNA:   3'- aaCGCGGCCCCCU----------UGGCaCGUgCGGu -5'
24512 5' -62.7 NC_005264.1 + 34990 0.66 0.605745
Target:  5'- -cGCGCCGGGuucuaGACCGccgGC-CGCCGc -3'
miRNA:   3'- aaCGCGGCCCcc---UUGGCa--CGuGCGGU- -5'
24512 5' -62.7 NC_005264.1 + 120786 0.66 0.599846
Target:  5'- -cGCGCCGcGGGcaacgcgauuggauaGGCCGcgUGCGCGUCGa -3'
miRNA:   3'- aaCGCGGCcCCC---------------UUGGC--ACGUGCGGU- -5'
24512 5' -62.7 NC_005264.1 + 66692 0.66 0.595918
Target:  5'- -gGCGCCGGGcGGGGggcguacuaCGUGU-CGCCGg -3'
miRNA:   3'- aaCGCGGCCC-CCUUg--------GCACGuGCGGU- -5'
24512 5' -62.7 NC_005264.1 + 162665 0.66 0.592974
Target:  5'- -cGCGCCGGcGGGucGuagguguacggucgGCgCGcUGCGCGCCGg -3'
miRNA:   3'- aaCGCGGCC-CCC--U--------------UG-GC-ACGUGCGGU- -5'
24512 5' -62.7 NC_005264.1 + 82436 0.66 0.586116
Target:  5'- -aGCGCCauuucgucgcuuGGGGGGGCCucguuggGUACGUCGa -3'
miRNA:   3'- aaCGCGG------------CCCCCUUGGca-----CGUGCGGU- -5'
24512 5' -62.7 NC_005264.1 + 33082 0.66 0.586116
Target:  5'- gUGC-CCGGGGcGGAuuUCGUGCAuaucgUGCCAg -3'
miRNA:   3'- aACGcGGCCCC-CUU--GGCACGU-----GCGGU- -5'
24512 5' -62.7 NC_005264.1 + 150711 0.66 0.570499
Target:  5'- -aGCGCCGGcGGAGgaaucgucaguuuuuCUcgcggggguGUGCACGCCAg -3'
miRNA:   3'- aaCGCGGCCcCCUU---------------GG---------CACGUGCGGU- -5'
24512 5' -62.7 NC_005264.1 + 54209 0.67 0.556919
Target:  5'- aUUGCG-CGGGGGAuacggacggcgGCCGgUGCguucACGCUAg -3'
miRNA:   3'- -AACGCgGCCCCCU-----------UGGC-ACG----UGCGGU- -5'
24512 5' -62.7 NC_005264.1 + 76243 0.67 0.547275
Target:  5'- -aGCGCuUGGGuguGGAGCCGUGacugcgguCGCCAc -3'
miRNA:   3'- aaCGCG-GCCC---CCUUGGCACgu------GCGGU- -5'
24512 5' -62.7 NC_005264.1 + 144439 0.67 0.547275
Target:  5'- cUGCGCCGGccGGAACgGUGguCGUUg -3'
miRNA:   3'- aACGCGGCCc-CCUUGgCACguGCGGu -5'
24512 5' -62.7 NC_005264.1 + 30901 0.67 0.537685
Target:  5'- -cGCGUCGGGGGAggacugcgagGCCGggcgGCucgACGuCCGu -3'
miRNA:   3'- aaCGCGGCCCCCU----------UGGCa---CG---UGC-GGU- -5'
24512 5' -62.7 NC_005264.1 + 3859 0.67 0.528154
Target:  5'- cUGCGCCGGGGauuGGGCUGcccCACGUCu -3'
miRNA:   3'- aACGCGGCCCC---CUUGGCac-GUGCGGu -5'
24512 5' -62.7 NC_005264.1 + 132935 0.67 0.509286
Target:  5'- -aGCGCCGacGGGGuAgCGccGCACGCCu -3'
miRNA:   3'- aaCGCGGC--CCCCuUgGCa-CGUGCGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.