miRNA display CGI


Results 1 - 15 of 15 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24513 3' -51.4 NC_005264.1 + 54138 0.66 0.991589
Target:  5'- -cGCCGGggucGGUGccgacuacaUCGACGGUGCGg -3'
miRNA:   3'- auCGGCUaau-CCAUc--------AGCUGCUACGC- -5'
24513 3' -51.4 NC_005264.1 + 43640 0.66 0.990373
Target:  5'- -cGCCGGcgAGGUcguagguguacGGUCGGCGcgcUGCGc -3'
miRNA:   3'- auCGGCUaaUCCA-----------UCAGCUGCu--ACGC- -5'
24513 3' -51.4 NC_005264.1 + 45917 0.66 0.990373
Target:  5'- gAGCCGAgcAGcUAGUUu-CGAUGCGg -3'
miRNA:   3'- aUCGGCUaaUCcAUCAGcuGCUACGC- -5'
24513 3' -51.4 NC_005264.1 + 93823 0.66 0.990373
Target:  5'- gUGGCCGAgguggcGGUucGGUUGGCcGUGCGc -3'
miRNA:   3'- -AUCGGCUaau---CCA--UCAGCUGcUACGC- -5'
24513 3' -51.4 NC_005264.1 + 104054 0.66 0.989024
Target:  5'- cGGCCucagGGGggcGGUCGACGAUuacgGCGa -3'
miRNA:   3'- aUCGGcuaaUCCa--UCAGCUGCUA----CGC- -5'
24513 3' -51.4 NC_005264.1 + 162670 0.66 0.987532
Target:  5'- cGGCgGGUcgUAGGUguacGGUCGGCGcgcUGCGc -3'
miRNA:   3'- aUCGgCUA--AUCCA----UCAGCUGCu--ACGC- -5'
24513 3' -51.4 NC_005264.1 + 91876 0.67 0.984083
Target:  5'- aUGGUCGAgguagcgGGGUGGUUGGcCGcgGCa -3'
miRNA:   3'- -AUCGGCUaa-----UCCAUCAGCU-GCuaCGc -5'
24513 3' -51.4 NC_005264.1 + 148646 0.67 0.979954
Target:  5'- gUGGCCGA-UGGGgcGaCGGCGAUcGCc -3'
miRNA:   3'- -AUCGGCUaAUCCauCaGCUGCUA-CGc -5'
24513 3' -51.4 NC_005264.1 + 48381 0.68 0.966218
Target:  5'- cAGCCGGUagacUGGGgcGUCGG-GcgGCGg -3'
miRNA:   3'- aUCGGCUA----AUCCauCAGCUgCuaCGC- -5'
24513 3' -51.4 NC_005264.1 + 131231 0.68 0.962825
Target:  5'- -cGCCGAgaAGGUAGUCG-CGAucucgucaaaagUGCc -3'
miRNA:   3'- auCGGCUaaUCCAUCAGCuGCU------------ACGc -5'
24513 3' -51.4 NC_005264.1 + 150497 0.69 0.9469
Target:  5'- -cGCCGAU--GGgcGUgGAUGGUGCGc -3'
miRNA:   3'- auCGGCUAauCCauCAgCUGCUACGC- -5'
24513 3' -51.4 NC_005264.1 + 31470 0.69 0.9469
Target:  5'- -cGCCGAU--GGgcGUgGAUGGUGCGc -3'
miRNA:   3'- auCGGCUAauCCauCAgCUGCUACGC- -5'
24513 3' -51.4 NC_005264.1 + 121545 0.72 0.867688
Target:  5'- gGGCCGAUagcguGGaAGUCGACGcggGCGg -3'
miRNA:   3'- aUCGGCUAau---CCaUCAGCUGCua-CGC- -5'
24513 3' -51.4 NC_005264.1 + 33627 0.73 0.808904
Target:  5'- cGGCCaGAUUGgcggcgacGGuUGGUCGACGGUGCu -3'
miRNA:   3'- aUCGG-CUAAU--------CC-AUCAGCUGCUACGc -5'
24513 3' -51.4 NC_005264.1 + 20114 1.09 0.008454
Target:  5'- aUAGCCGAUUAGGUAGUCGACGAUGCGg -3'
miRNA:   3'- -AUCGGCUAAUCCAUCAGCUGCUACGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.