miRNA display CGI


Results 1 - 20 of 310 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24513 5' -62.5 NC_005264.1 + 77377 0.66 0.688239
Target:  5'- aGCGCGUCGCCcguaaggaguuccagGGCcgGCCCGcauauGGAUaGCg -3'
miRNA:   3'- cCGCGCGGCGG---------------CCG--CGGGU-----UCUAgCG- -5'
24513 5' -62.5 NC_005264.1 + 98161 0.66 0.688239
Target:  5'- cGGCcuGC-CCGCCGGCagGCCCAaacccccuAaacgacauacgcccaGAUCGCa -3'
miRNA:   3'- -CCG--CGcGGCGGCCG--CGGGU--------U---------------CUAGCG- -5'
24513 5' -62.5 NC_005264.1 + 33211 0.66 0.68441
Target:  5'- aGGCugGCGgCGCuCGGCGUCUacucGAGAagcuUCGCn -3'
miRNA:   3'- -CCG--CGCgGCG-GCCGCGGG----UUCU----AGCG- -5'
24513 5' -62.5 NC_005264.1 + 87743 0.66 0.68441
Target:  5'- aGCuCGgCGCCGGCGCCUGc---CGCa -3'
miRNA:   3'- cCGcGCgGCGGCCGCGGGUucuaGCG- -5'
24513 5' -62.5 NC_005264.1 + 64275 0.66 0.68441
Target:  5'- aGGCugGCuaCGCgGGUGCCgAGuAUCGCg -3'
miRNA:   3'- -CCG--CGcgGCGgCCGCGGgUUcUAGCG- -5'
24513 5' -62.5 NC_005264.1 + 132950 0.66 0.68441
Target:  5'- gGGCGUuucGCCGCCaugccauGCGaCCAuuGUCGCg -3'
miRNA:   3'- -CCGCG---CGGCGGc------CGCgGGUucUAGCG- -5'
24513 5' -62.5 NC_005264.1 + 95461 0.66 0.68441
Target:  5'- -cCGCGCCgGCgGGCGCagCGAGcgCGg -3'
miRNA:   3'- ccGCGCGG-CGgCCGCGg-GUUCuaGCg -5'
24513 5' -62.5 NC_005264.1 + 50590 0.66 0.68441
Target:  5'- cGGCGCugaGCaGcCCGGCGCUgGAcguUCGCg -3'
miRNA:   3'- -CCGCG---CGgC-GGCCGCGGgUUcu-AGCG- -5'
24513 5' -62.5 NC_005264.1 + 45801 0.66 0.68441
Target:  5'- cGGUcuGgGCCGCC-GCGCU---GAUCGCg -3'
miRNA:   3'- -CCG--CgCGGCGGcCGCGGguuCUAGCG- -5'
24513 5' -62.5 NC_005264.1 + 137315 0.66 0.683452
Target:  5'- -cCGCGCCGCCuuaugGGCGCUUGacauccuAGA-CGCg -3'
miRNA:   3'- ccGCGCGGCGG-----CCGCGGGU-------UCUaGCG- -5'
24513 5' -62.5 NC_005264.1 + 122992 0.66 0.681535
Target:  5'- uGGcCGCGCCgGCCGGCuuuaccGCCaagCAGGGcggcacaugccuccUCGCc -3'
miRNA:   3'- -CC-GCGCGG-CGGCCG------CGG---GUUCU--------------AGCG- -5'
24513 5' -62.5 NC_005264.1 + 118935 0.66 0.674812
Target:  5'- aGGCGacgGCCGCgcucaucgucucCGGCGCCCccu-UUGCc -3'
miRNA:   3'- -CCGCg--CGGCG------------GCCGCGGGuucuAGCG- -5'
24513 5' -62.5 NC_005264.1 + 15569 0.66 0.674812
Target:  5'- cGGCGUGCaGCUcGUGgCCAAGcUUGCg -3'
miRNA:   3'- -CCGCGCGgCGGcCGCgGGUUCuAGCG- -5'
24513 5' -62.5 NC_005264.1 + 105771 0.66 0.674812
Target:  5'- uGCGCccGCCGCUgacgaGGaCGCUCuaccaacguaGAGGUCGCg -3'
miRNA:   3'- cCGCG--CGGCGG-----CC-GCGGG----------UUCUAGCG- -5'
24513 5' -62.5 NC_005264.1 + 46284 0.66 0.674812
Target:  5'- --aGCGCCGCagcucgcucaucCGGCGUCUuuGcGUCGCa -3'
miRNA:   3'- ccgCGCGGCG------------GCCGCGGGuuC-UAGCG- -5'
24513 5' -62.5 NC_005264.1 + 51095 0.66 0.674812
Target:  5'- cGCG-GUCGCCGGUGCUgcGGucugcUCGCg -3'
miRNA:   3'- cCGCgCGGCGGCCGCGGguUCu----AGCG- -5'
24513 5' -62.5 NC_005264.1 + 72488 0.66 0.674812
Target:  5'- cGGCaGCGUCGgCGGguugaagaucUGCgCCGAGAggCGCg -3'
miRNA:   3'- -CCG-CGCGGCgGCC----------GCG-GGUUCUa-GCG- -5'
24513 5' -62.5 NC_005264.1 + 48548 0.66 0.674812
Target:  5'- cGCGCGCCcCCGuCGCCUuc-GUCGUc -3'
miRNA:   3'- cCGCGCGGcGGCcGCGGGuucUAGCG- -5'
24513 5' -62.5 NC_005264.1 + 60312 0.66 0.674812
Target:  5'- gGGCGCGaCCGg-GGCGUaUggGAUCGUc -3'
miRNA:   3'- -CCGCGC-GGCggCCGCGgGuuCUAGCG- -5'
24513 5' -62.5 NC_005264.1 + 55828 0.66 0.674812
Target:  5'- ---uCGCCG-CGGUGCCCAAaaAUCGCa -3'
miRNA:   3'- ccgcGCGGCgGCCGCGGGUUc-UAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.