miRNA display CGI


Results 1 - 20 of 310 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24513 5' -62.5 NC_005264.1 + 20150 1.13 0.000503
Target:  5'- uGGCGCGCCGCCGGCGCCCAAGAUCGCg -3'
miRNA:   3'- -CCGCGCGGCGGCCGCGGGUUCUAGCG- -5'
24513 5' -62.5 NC_005264.1 + 49586 0.8 0.110252
Target:  5'- cGGCGCacGCCGCCGGCGaCCAGGAcgacggggggCGCu -3'
miRNA:   3'- -CCGCG--CGGCGGCCGCgGGUUCUa---------GCG- -5'
24513 5' -62.5 NC_005264.1 + 142507 0.79 0.124752
Target:  5'- cGGCGCGUuuccugcuUGCCGGUGCCCAcGAUacaGCg -3'
miRNA:   3'- -CCGCGCG--------GCGGCCGCGGGUuCUAg--CG- -5'
24513 5' -62.5 NC_005264.1 + 126894 0.77 0.151662
Target:  5'- gGGgGCGgCGUCGGCGCCCcAGAU-GCg -3'
miRNA:   3'- -CCgCGCgGCGGCCGCGGGuUCUAgCG- -5'
24513 5' -62.5 NC_005264.1 + 7868 0.77 0.151662
Target:  5'- gGGgGCGgCGUCGGCGCCCcAGAU-GCg -3'
miRNA:   3'- -CCgCGCgGCGGCCGCGGGuUCUAgCG- -5'
24513 5' -62.5 NC_005264.1 + 17732 0.77 0.15917
Target:  5'- uGCGCGCCG-CGGCGCaaccuaugCCAAGuUCGCg -3'
miRNA:   3'- cCGCGCGGCgGCCGCG--------GGUUCuAGCG- -5'
24513 5' -62.5 NC_005264.1 + 30861 0.76 0.179424
Target:  5'- cGGCGCGCCGCCcgguaggcaacGGCGUCUc-GAUCGg -3'
miRNA:   3'- -CCGCGCGGCGG-----------CCGCGGGuuCUAGCg -5'
24513 5' -62.5 NC_005264.1 + 149887 0.76 0.179424
Target:  5'- cGGCGCGCCGCCcgguaggcaacGGCGUCUc-GAUCGg -3'
miRNA:   3'- -CCGCGCGGCGG-----------CCGCGGGuuCUAGCg -5'
24513 5' -62.5 NC_005264.1 + 103127 0.76 0.18374
Target:  5'- cGGCGCgguaGCCGCCGGCGC---GGcgCGCg -3'
miRNA:   3'- -CCGCG----CGGCGGCCGCGgguUCuaGCG- -5'
24513 5' -62.5 NC_005264.1 + 58307 0.76 0.186816
Target:  5'- uGGCGCGCuuCGCCGGCuGCCCGcgaAGGggaacaaauuccccUCGCc -3'
miRNA:   3'- -CCGCGCG--GCGGCCG-CGGGU---UCU--------------AGCG- -5'
24513 5' -62.5 NC_005264.1 + 30079 0.76 0.197243
Target:  5'- --gGCGCCGCC-GCGCCCGgacAGaAUCGCg -3'
miRNA:   3'- ccgCGCGGCGGcCGCGGGU---UC-UAGCG- -5'
24513 5' -62.5 NC_005264.1 + 7059 0.75 0.221669
Target:  5'- cGGCgacgGCGCCgGCCGGCGCC----GUCGCg -3'
miRNA:   3'- -CCG----CGCGG-CGGCCGCGGguucUAGCG- -5'
24513 5' -62.5 NC_005264.1 + 126086 0.75 0.221669
Target:  5'- cGGCgacgGCGCCgGCCGGCGCC----GUCGCg -3'
miRNA:   3'- -CCG----CGCGG-CGGCCGCGGguucUAGCG- -5'
24513 5' -62.5 NC_005264.1 + 86222 0.75 0.226854
Target:  5'- uGCGUGCuCGUgGGCGgCCGAGuUCGCa -3'
miRNA:   3'- cCGCGCG-GCGgCCGCgGGUUCuAGCG- -5'
24513 5' -62.5 NC_005264.1 + 126307 0.74 0.237531
Target:  5'- gGGCGCGCgGCCGauggcuccuGCGCCCGccucgucgAGGcCGCg -3'
miRNA:   3'- -CCGCGCGgCGGC---------CGCGGGU--------UCUaGCG- -5'
24513 5' -62.5 NC_005264.1 + 26650 0.74 0.237531
Target:  5'- aGCGCGgCGCCGGCGCCgCGcuAGAaCGa -3'
miRNA:   3'- cCGCGCgGCGGCCGCGG-GU--UCUaGCg -5'
24513 5' -62.5 NC_005264.1 + 144306 0.74 0.240815
Target:  5'- cGGCGCGCCcucagggggagaCGGCGCCCccGAUCGg -3'
miRNA:   3'- -CCGCGCGGcg----------GCCGCGGGuuCUAGCg -5'
24513 5' -62.5 NC_005264.1 + 97720 0.74 0.243025
Target:  5'- aGCaGCGCCGCCaGGCGC-CAAGAgcuguccgacaUCGCc -3'
miRNA:   3'- cCG-CGCGGCGG-CCGCGgGUUCU-----------AGCG- -5'
24513 5' -62.5 NC_005264.1 + 75092 0.74 0.243025
Target:  5'- cGGCGCuGCggcaggCGCCGGCGCCgAgcuGGggCGCa -3'
miRNA:   3'- -CCGCG-CG------GCGGCCGCGGgU---UCuaGCG- -5'
24513 5' -62.5 NC_005264.1 + 159668 0.74 0.248625
Target:  5'- -cCGCGCCGUCGcGCGCggAGGGUCGCc -3'
miRNA:   3'- ccGCGCGGCGGC-CGCGggUUCUAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.