miRNA display CGI


Results 1 - 20 of 310 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24513 5' -62.5 NC_005264.1 + 137 0.69 0.494042
Target:  5'- cGGCGgcCGCCuuaacGCCGGCGCgCA-GcgCGCc -3'
miRNA:   3'- -CCGC--GCGG-----CGGCCGCGgGUuCuaGCG- -5'
24513 5' -62.5 NC_005264.1 + 193 0.7 0.407642
Target:  5'- cGGCGCGCUuCCGaGCcucgaaaucguaGCCCccGAUCGCu -3'
miRNA:   3'- -CCGCGCGGcGGC-CG------------CGGGuuCUAGCG- -5'
24513 5' -62.5 NC_005264.1 + 815 0.68 0.56871
Target:  5'- gGGUGCGCgGCCGGCuuuaGCCUcugucucuGGcgUGCc -3'
miRNA:   3'- -CCGCGCGgCGGCCG----CGGGu-------UCuaGCG- -5'
24513 5' -62.5 NC_005264.1 + 1160 0.69 0.476054
Target:  5'- cGGC-CGCCagucuGCCGGCGCgCGauggGGGUaCGCa -3'
miRNA:   3'- -CCGcGCGG-----CGGCCGCGgGU----UCUA-GCG- -5'
24513 5' -62.5 NC_005264.1 + 2179 0.73 0.301908
Target:  5'- cGCG-GCCguugccccuccauuGCCGGCGCCCAuGcgCGCu -3'
miRNA:   3'- cCGCgCGG--------------CGGCCGCGGGUuCuaGCG- -5'
24513 5' -62.5 NC_005264.1 + 2757 0.7 0.448837
Target:  5'- cGGCGCGuCCcCCGGCGCCguAccgucuggggaguGGUCGg -3'
miRNA:   3'- -CCGCGC-GGcGGCCGCGGguU-------------CUAGCg -5'
24513 5' -62.5 NC_005264.1 + 3449 0.72 0.31739
Target:  5'- gGGUcCGCCGCCcguGGCGCCCGGugcCGCa -3'
miRNA:   3'- -CCGcGCGGCGG---CCGCGGGUUcuaGCG- -5'
24513 5' -62.5 NC_005264.1 + 3595 0.68 0.5309
Target:  5'- aGGCGCGaagaauuaCCGCCgcggGGgGCCgCGAGGgcgggCGCg -3'
miRNA:   3'- -CCGCGC--------GGCGG----CCgCGG-GUUCUa----GCG- -5'
24513 5' -62.5 NC_005264.1 + 3705 0.67 0.604257
Target:  5'- gGGCGCacaguacuuGCCGCgGGCGggcuucuccgacguCUCGcGAUCGCc -3'
miRNA:   3'- -CCGCG---------CGGCGgCCGC--------------GGGUuCUAGCG- -5'
24513 5' -62.5 NC_005264.1 + 3766 0.67 0.607154
Target:  5'- cGGgGCGCUGCgGGC-CCUu-GGUCGa -3'
miRNA:   3'- -CCgCGCGGCGgCCGcGGGuuCUAGCg -5'
24513 5' -62.5 NC_005264.1 + 3966 0.66 0.642958
Target:  5'- uGGcCGCGCCgGCCGGCuuuaccGCCagCAGGGcggcacaugccuccUCGCc -3'
miRNA:   3'- -CC-GCGCGG-CGGCCG------CGG--GUUCU--------------AGCG- -5'
24513 5' -62.5 NC_005264.1 + 4335 0.67 0.607154
Target:  5'- aGGCcUGCCcCUGGCGgCUGAGcgCGCg -3'
miRNA:   3'- -CCGcGCGGcGGCCGCgGGUUCuaGCG- -5'
24513 5' -62.5 NC_005264.1 + 4736 0.71 0.39953
Target:  5'- uGCcCGCCgaGCCGGCGUCCGGGGguggaccgccgCGCg -3'
miRNA:   3'- cCGcGCGG--CGGCCGCGGGUUCUa----------GCG- -5'
24513 5' -62.5 NC_005264.1 + 4769 0.66 0.665183
Target:  5'- uGUGCGCCuucuGCgCGGCGCCgu---UCGCg -3'
miRNA:   3'- cCGCGCGG----CG-GCCGCGGguucuAGCG- -5'
24513 5' -62.5 NC_005264.1 + 5435 0.67 0.616822
Target:  5'- cGGCGuCGCCGCUcuCGCCgGAGGagGUc -3'
miRNA:   3'- -CCGC-GCGGCGGccGCGGgUUCUagCG- -5'
24513 5' -62.5 NC_005264.1 + 6139 0.66 0.645861
Target:  5'- gGGCGaggGCCGC--GCGCCCGucgcGcAUCGCg -3'
miRNA:   3'- -CCGCg--CGGCGgcCGCGGGUu---C-UAGCG- -5'
24513 5' -62.5 NC_005264.1 + 6439 0.66 0.664219
Target:  5'- cGGCgGCGUCGCUGGCGgagaacuCCUcGGcggCGCg -3'
miRNA:   3'- -CCG-CGCGGCGGCCGC-------GGGuUCua-GCG- -5'
24513 5' -62.5 NC_005264.1 + 7059 0.75 0.221669
Target:  5'- cGGCgacgGCGCCgGCCGGCGCC----GUCGCg -3'
miRNA:   3'- -CCG----CGCGG-CGGCCGCGGguucUAGCG- -5'
24513 5' -62.5 NC_005264.1 + 7400 0.7 0.423336
Target:  5'- cGGCcccgGCGCCGUCGuccauugguucguGCGCCgGGuGGUCGCu -3'
miRNA:   3'- -CCG----CGCGGCGGC-------------CGCGGgUU-CUAGCG- -5'
24513 5' -62.5 NC_005264.1 + 7868 0.77 0.151662
Target:  5'- gGGgGCGgCGUCGGCGCCCcAGAU-GCg -3'
miRNA:   3'- -CCgCGCgGCGGCCGCGGGuUCUAgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.