miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24514 3' -50 NC_005264.1 + 9100 0.66 0.998568
Target:  5'- gGgGCCGAa-UAUGG-GUCUUCG-GUGa -3'
miRNA:   3'- -CgCGGCUgaAUAUCuCAGAAGCaCGC- -5'
24514 3' -50 NC_005264.1 + 128127 0.66 0.998568
Target:  5'- gGgGCCGAa-UAUGG-GUCUUCG-GUGa -3'
miRNA:   3'- -CgCGGCUgaAUAUCuCAGAAGCaCGC- -5'
24514 3' -50 NC_005264.1 + 22209 0.66 0.998277
Target:  5'- cGUGCgCGGCaaGUGGAGUCgucgccUCGUcgGCGg -3'
miRNA:   3'- -CGCG-GCUGaaUAUCUCAGa-----AGCA--CGC- -5'
24514 3' -50 NC_005264.1 + 51934 0.66 0.997544
Target:  5'- cGCGCCGAgCUUGgcgAGGGUgccgcuaaCgcgUCGUGuCGg -3'
miRNA:   3'- -CGCGGCU-GAAUa--UCUCA--------Ga--AGCAC-GC- -5'
24514 3' -50 NC_005264.1 + 79887 0.66 0.997544
Target:  5'- uCGCCGGCUca-GGccuGGUCUuugCGUGCGc -3'
miRNA:   3'- cGCGGCUGAauaUC---UCAGAa--GCACGC- -5'
24514 3' -50 NC_005264.1 + 7011 0.66 0.99737
Target:  5'- gGCGCCaACgugaaaguuauUGGGGUCUgCGUGCu -3'
miRNA:   3'- -CGCGGcUGaau--------AUCUCAGAaGCACGc -5'
24514 3' -50 NC_005264.1 + 148315 0.67 0.996568
Target:  5'- cGCGCCgGugUUcGUAuGGUCUgagguugCGUGCGc -3'
miRNA:   3'- -CGCGG-CugAA-UAUcUCAGAa------GCACGC- -5'
24514 3' -50 NC_005264.1 + 46569 0.67 0.995292
Target:  5'- cGCGCCacGGCUUcca-AGUCgcgCGUGCGg -3'
miRNA:   3'- -CGCGG--CUGAAuaucUCAGaa-GCACGC- -5'
24514 3' -50 NC_005264.1 + 125100 0.68 0.988881
Target:  5'- cGCGUCGACggUGgcGGGugccuguuuagguUCUUCGUGCu -3'
miRNA:   3'- -CGCGGCUGa-AUauCUC-------------AGAAGCACGc -5'
24514 3' -50 NC_005264.1 + 54425 0.69 0.977613
Target:  5'- cGCGCCGACUagggcGUGGGGUUguUUUuUGCGc -3'
miRNA:   3'- -CGCGGCUGAa----UAUCUCAG--AAGcACGC- -5'
24514 3' -50 NC_005264.1 + 57928 0.69 0.976873
Target:  5'- cCGCCGcCUUGUcugaaacuccauggGGGGUC-UCGUGCu -3'
miRNA:   3'- cGCGGCuGAAUA--------------UCUCAGaAGCACGc -5'
24514 3' -50 NC_005264.1 + 115044 0.7 0.975077
Target:  5'- uGCGCCccGGCgaaagccgAG-GUCUUCGUGCa -3'
miRNA:   3'- -CGCGG--CUGaaua----UCuCAGAAGCACGc -5'
24514 3' -50 NC_005264.1 + 65372 0.7 0.966218
Target:  5'- aCGCCGcCggGUAGAGUC-UCGcagGCGa -3'
miRNA:   3'- cGCGGCuGaaUAUCUCAGaAGCa--CGC- -5'
24514 3' -50 NC_005264.1 + 18971 1.12 0.00895
Target:  5'- cGCGCCGACUUAUAGAGUCUUCGUGCGc -3'
miRNA:   3'- -CGCGGCUGAAUAUCUCAGAAGCACGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.