miRNA display CGI


Results 21 - 40 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24514 5' -49.7 NC_005264.1 + 130972 0.66 0.99794
Target:  5'- aGGCGUGCgCCGAccGCGAGGcgcuggaagauuUcAGgGGGUc -3'
miRNA:   3'- -CCGCAUG-GGUU--UGUUCU------------AuUCgCCCG- -5'
24514 5' -49.7 NC_005264.1 + 42165 0.66 0.99794
Target:  5'- uGGCGUaacGCCCGGAaaGAGAU-GGCaGGUu -3'
miRNA:   3'- -CCGCA---UGGGUUUg-UUCUAuUCGcCCG- -5'
24514 5' -49.7 NC_005264.1 + 6102 0.66 0.99794
Target:  5'- cGGCGgcagACCCGGAUGacguccaucAGGUGcgGGaGGGCg -3'
miRNA:   3'- -CCGCa---UGGGUUUGU---------UCUAU--UCgCCCG- -5'
24514 5' -49.7 NC_005264.1 + 162547 0.66 0.99794
Target:  5'- uGGUaUACCCAGcgcucuucGCcAGAaugaucUAAGUGGGCu -3'
miRNA:   3'- -CCGcAUGGGUU--------UGuUCU------AUUCGCCCG- -5'
24514 5' -49.7 NC_005264.1 + 25614 0.66 0.99794
Target:  5'- cGGCGUugCgGAACAcGGcggcGGUGGGg -3'
miRNA:   3'- -CCGCAugGgUUUGUuCUau--UCGCCCg -5'
24514 5' -49.7 NC_005264.1 + 29456 0.66 0.99794
Target:  5'- cGGuCGgcCCCAcGC-GGAUuGGgGGGCg -3'
miRNA:   3'- -CC-GCauGGGUuUGuUCUAuUCgCCCG- -5'
24514 5' -49.7 NC_005264.1 + 114679 0.66 0.997903
Target:  5'- gGGgGUGCagccacgCCGAGCAGGAUu-GCGcGGUc -3'
miRNA:   3'- -CCgCAUG-------GGUUUGUUCUAuuCGC-CCG- -5'
24514 5' -49.7 NC_005264.1 + 111835 0.66 0.997709
Target:  5'- aGGUGUA-CCGAGCAGGAuuucggcaacgugcuUAAGgccuucgaguuCGGGCu -3'
miRNA:   3'- -CCGCAUgGGUUUGUUCU---------------AUUC-----------GCCCG- -5'
24514 5' -49.7 NC_005264.1 + 39373 0.66 0.997544
Target:  5'- cGCaUGCCCGuACAuagAGGUcauGAGCGaGGCg -3'
miRNA:   3'- cCGcAUGGGUuUGU---UCUA---UUCGC-CCG- -5'
24514 5' -49.7 NC_005264.1 + 81799 0.66 0.997544
Target:  5'- cGCG---CCAGugAGGGUAgacGGCGGGUa -3'
miRNA:   3'- cCGCaugGGUUugUUCUAU---UCGCCCG- -5'
24514 5' -49.7 NC_005264.1 + 95467 0.66 0.997544
Target:  5'- cGGCGgGCgC-AGCGAGc---GCGGGCg -3'
miRNA:   3'- -CCGCaUGgGuUUGUUCuauuCGCCCG- -5'
24514 5' -49.7 NC_005264.1 + 236 0.66 0.997544
Target:  5'- -cCGUGCCUGGcgccAC-AGcgAGGCGGGCc -3'
miRNA:   3'- ccGCAUGGGUU----UGuUCuaUUCGCCCG- -5'
24514 5' -49.7 NC_005264.1 + 119263 0.66 0.997544
Target:  5'- -cCGUGCCUGGcgccAC-AGcgAGGCGGGCc -3'
miRNA:   3'- ccGCAUGGGUU----UGuUCuaUUCGCCCG- -5'
24514 5' -49.7 NC_005264.1 + 99492 0.66 0.997501
Target:  5'- cGCGUACgCGGACAcacucguGGAcagcuuGGCGGGg -3'
miRNA:   3'- cCGCAUGgGUUUGU-------UCUau----UCGCCCg -5'
24514 5' -49.7 NC_005264.1 + 44271 0.67 0.997087
Target:  5'- cGCGUcacgccGCgCGGAUGAGAUcaccGAGCGGGa -3'
miRNA:   3'- cCGCA------UGgGUUUGUUCUA----UUCGCCCg -5'
24514 5' -49.7 NC_005264.1 + 44909 0.67 0.997087
Target:  5'- gGGCGggaggagagAUCCGGcGCAAGcgAAccGCGGGCc -3'
miRNA:   3'- -CCGCa--------UGGGUU-UGUUCuaUU--CGCCCG- -5'
24514 5' -49.7 NC_005264.1 + 20229 0.67 0.997087
Target:  5'- uGUGgcCCCGcGCGuGAcGGGUGGGCa -3'
miRNA:   3'- cCGCauGGGUuUGUuCUaUUCGCCCG- -5'
24514 5' -49.7 NC_005264.1 + 56242 0.67 0.997087
Target:  5'- cGCGcgGCUUuuguCGAGGU-GGCGGGCa -3'
miRNA:   3'- cCGCa-UGGGuuu-GUUCUAuUCGCCCG- -5'
24514 5' -49.7 NC_005264.1 + 152677 0.67 0.996562
Target:  5'- gGGCuGggaCCAAGCGGG---GGCGGGUa -3'
miRNA:   3'- -CCG-CaugGGUUUGUUCuauUCGCCCG- -5'
24514 5' -49.7 NC_005264.1 + 36016 0.67 0.996562
Target:  5'- aGGCGuUGCCCGccAAUAcucuGAgcGAGCGGGa -3'
miRNA:   3'- -CCGC-AUGGGU--UUGUu---CUa-UUCGCCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.