miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24515 3' -59.8 NC_005264.1 + 80138 0.66 0.806406
Target:  5'- gCCGCUGUCGuGGCUGggUCUAGCa--- -3'
miRNA:   3'- -GGCGGCGGCcUCGACa-AGGUCGagcg -5'
24515 3' -59.8 NC_005264.1 + 87623 0.66 0.806406
Target:  5'- gCCGCCGCgCaGGGCcGaUgCAGC-CGCg -3'
miRNA:   3'- -GGCGGCG-GcCUCGaCaAgGUCGaGCG- -5'
24515 3' -59.8 NC_005264.1 + 104835 0.66 0.806406
Target:  5'- cCUGuCCGCCGGGgccGCUGagCCAcgGC-CGCc -3'
miRNA:   3'- -GGC-GGCGGCCU---CGACaaGGU--CGaGCG- -5'
24515 3' -59.8 NC_005264.1 + 77380 0.66 0.797819
Target:  5'- gCGUCGCCcguaaGGAGUUccaGggCCGGCcCGCa -3'
miRNA:   3'- gGCGGCGG-----CCUCGA---CaaGGUCGaGCG- -5'
24515 3' -59.8 NC_005264.1 + 55408 0.66 0.797819
Target:  5'- aCGUCGCCGuAGUUGUagUCUAuGCgCGCg -3'
miRNA:   3'- gGCGGCGGCcUCGACA--AGGU-CGaGCG- -5'
24515 3' -59.8 NC_005264.1 + 64685 0.66 0.797819
Target:  5'- cCUGCCGgCGG-GCaGgcCguGCUCGCc -3'
miRNA:   3'- -GGCGGCgGCCuCGaCaaGguCGAGCG- -5'
24515 3' -59.8 NC_005264.1 + 60895 0.66 0.797819
Target:  5'- aCGCCGCggUGGGGCcGacgccgCCAGuUUCGCg -3'
miRNA:   3'- gGCGGCG--GCCUCGaCaa----GGUC-GAGCG- -5'
24515 3' -59.8 NC_005264.1 + 33026 0.66 0.797819
Target:  5'- aCGCUa-CGGGGCUccgCCAGCUaCGCg -3'
miRNA:   3'- gGCGGcgGCCUCGAcaaGGUCGA-GCG- -5'
24515 3' -59.8 NC_005264.1 + 107308 0.66 0.796952
Target:  5'- uCCGUCGCCaccagcuGGAGaCUGUUgCCuGCU-GCu -3'
miRNA:   3'- -GGCGGCGG-------CCUC-GACAA-GGuCGAgCG- -5'
24515 3' -59.8 NC_005264.1 + 162253 0.66 0.789093
Target:  5'- cUCGCUGCCGGAGUcGggCgAG-UCGUc -3'
miRNA:   3'- -GGCGGCGGCCUCGaCaaGgUCgAGCG- -5'
24515 3' -59.8 NC_005264.1 + 52776 0.66 0.789093
Target:  5'- -gGCUGCCuGGAGCgaUGcUUUCGcgccGCUCGCg -3'
miRNA:   3'- ggCGGCGG-CCUCG--AC-AAGGU----CGAGCG- -5'
24515 3' -59.8 NC_005264.1 + 98634 0.66 0.789093
Target:  5'- uCCGCaaggccgaGUCGGaAGUgggGUUCCuGCUCGa -3'
miRNA:   3'- -GGCGg-------CGGCC-UCGa--CAAGGuCGAGCg -5'
24515 3' -59.8 NC_005264.1 + 40786 0.66 0.789093
Target:  5'- uCCGCggCGCCGaGAGCgGagCC-GCUUGCc -3'
miRNA:   3'- -GGCG--GCGGC-CUCGaCaaGGuCGAGCG- -5'
24515 3' -59.8 NC_005264.1 + 138459 0.66 0.789093
Target:  5'- cUCGCCGCCGGGGgaGccgcgaagCCGGUcaUGCc -3'
miRNA:   3'- -GGCGGCGGCCUCgaCaa------GGUCGa-GCG- -5'
24515 3' -59.8 NC_005264.1 + 137226 0.66 0.789093
Target:  5'- aCCGCCGCCGuGuuccGCaacgCCGGCccggCGCu -3'
miRNA:   3'- -GGCGGCGGC-Cu---CGacaaGGUCGa---GCG- -5'
24515 3' -59.8 NC_005264.1 + 138605 0.66 0.783793
Target:  5'- uUCGgCGCCGGAGUgucuuacuaucCCGGCgCGCu -3'
miRNA:   3'- -GGCgGCGGCCUCGacaa-------GGUCGaGCG- -5'
24515 3' -59.8 NC_005264.1 + 97964 0.66 0.780235
Target:  5'- uCCGCCGCCuugcGGGCaaucucCCAGC-CGCc -3'
miRNA:   3'- -GGCGGCGGc---CUCGacaa--GGUCGaGCG- -5'
24515 3' -59.8 NC_005264.1 + 72465 0.66 0.780235
Target:  5'- gCGCCGCCGGucGGaucgUGUaCCGGCagCGUc -3'
miRNA:   3'- gGCGGCGGCC--UCg---ACAaGGUCGa-GCG- -5'
24515 3' -59.8 NC_005264.1 + 33799 0.66 0.780235
Target:  5'- gCGCaCGCCGcu-UUGgaCCGGCUCGCc -3'
miRNA:   3'- gGCG-GCGGCcucGACaaGGUCGAGCG- -5'
24515 3' -59.8 NC_005264.1 + 11315 0.66 0.771255
Target:  5'- aCGCCGCCcauGAGU---UCUAGCUUGUc -3'
miRNA:   3'- gGCGGCGGc--CUCGacaAGGUCGAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.