miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24515 5' -56.1 NC_005264.1 + 114478 0.66 0.908375
Target:  5'- aCGCGGcacuGCGcAAcGAGGCCGCCAUg -3'
miRNA:   3'- gGUGCUcu--CGUcUU-CUCCGGCGGUAa -5'
24515 5' -56.1 NC_005264.1 + 76295 0.66 0.908375
Target:  5'- aCCAUcuGGGCGcGggGGGGCUGCUg-- -3'
miRNA:   3'- -GGUGcuCUCGU-CuuCUCCGGCGGuaa -5'
24515 5' -56.1 NC_005264.1 + 156583 0.66 0.907146
Target:  5'- uCCAcCGAGAcCAGAcugaggauccgcGGGGCCGCCGc- -3'
miRNA:   3'- -GGU-GCUCUcGUCUu-----------CUCCGGCGGUaa -5'
24515 5' -56.1 NC_005264.1 + 4890 0.66 0.902138
Target:  5'- aCACGcGGAGUucGAGGccacgcuGGCCGCCGUc -3'
miRNA:   3'- gGUGC-UCUCGu-CUUCu------CCGGCGGUAa -5'
24515 5' -56.1 NC_005264.1 + 25988 0.66 0.902138
Target:  5'- uUCugGAGAaCGGGacGGAGGCUugGCCGUa -3'
miRNA:   3'- -GGugCUCUcGUCU--UCUCCGG--CGGUAa -5'
24515 5' -56.1 NC_005264.1 + 14844 0.66 0.902138
Target:  5'- uCCGCGAGaAGUucguGcAGAGGCuUGCCAg- -3'
miRNA:   3'- -GGUGCUC-UCGu---CuUCUCCG-GCGGUaa -5'
24515 5' -56.1 NC_005264.1 + 25626 0.66 0.902138
Target:  5'- aCACGGcGGCGGu-GGGGCCGCg--- -3'
miRNA:   3'- gGUGCUcUCGUCuuCUCCGGCGguaa -5'
24515 5' -56.1 NC_005264.1 + 79400 0.66 0.902138
Target:  5'- gCCGCGGGcGUGGc-GAGGCCGCgGc- -3'
miRNA:   3'- -GGUGCUCuCGUCuuCUCCGGCGgUaa -5'
24515 5' -56.1 NC_005264.1 + 35003 0.66 0.895667
Target:  5'- gCCGCGAGcGGCgcucgaAGAGGAGcGCUgGCCGUc -3'
miRNA:   3'- -GGUGCUC-UCG------UCUUCUC-CGG-CGGUAa -5'
24515 5' -56.1 NC_005264.1 + 45204 0.66 0.895667
Target:  5'- -aGCGAG-GCGGAcgAGAGGCgGCgAUc -3'
miRNA:   3'- ggUGCUCuCGUCU--UCUCCGgCGgUAa -5'
24515 5' -56.1 NC_005264.1 + 93582 0.66 0.895667
Target:  5'- cCCAUGGcAGCGGAuGAGGCgCGCgAg- -3'
miRNA:   3'- -GGUGCUcUCGUCUuCUCCG-GCGgUaa -5'
24515 5' -56.1 NC_005264.1 + 154030 0.66 0.895667
Target:  5'- gCCGCGAGcGGCgcucgaAGAGGAGcGCUgGCCGUc -3'
miRNA:   3'- -GGUGCUC-UCG------UCUUCUC-CGG-CGGUAa -5'
24515 5' -56.1 NC_005264.1 + 30569 0.66 0.895667
Target:  5'- aCCgGCGGGGucGCAGGAGAGGacaCGCaCAa- -3'
miRNA:   3'- -GG-UGCUCU--CGUCUUCUCCg--GCG-GUaa -5'
24515 5' -56.1 NC_005264.1 + 133665 0.66 0.888963
Target:  5'- aCCugGGGAGCuAGAGGAacgccuGCuCGCCGc- -3'
miRNA:   3'- -GGugCUCUCG-UCUUCUc-----CG-GCGGUaa -5'
24515 5' -56.1 NC_005264.1 + 126273 0.66 0.888963
Target:  5'- gCGCGAGgacuuGGCGGAGGucGgCGCCAg- -3'
miRNA:   3'- gGUGCUC-----UCGUCUUCucCgGCGGUaa -5'
24515 5' -56.1 NC_005264.1 + 7246 0.66 0.888963
Target:  5'- gCGCGAGgacuuGGCGGAGGucGgCGCCAg- -3'
miRNA:   3'- gGUGCUC-----UCGUCUUCucCgGCGGUaa -5'
24515 5' -56.1 NC_005264.1 + 26430 0.66 0.88828
Target:  5'- aCUACGAGAccGCGGAcGGGcguugucGGUCGCCAUc -3'
miRNA:   3'- -GGUGCUCU--CGUCU-UCU-------CCGGCGGUAa -5'
24515 5' -56.1 NC_005264.1 + 116649 0.66 0.88828
Target:  5'- aCGCGAGcgagguuguagauGGCGG-GGcGGCCGCCGa- -3'
miRNA:   3'- gGUGCUC-------------UCGUCuUCuCCGGCGGUaa -5'
24515 5' -56.1 NC_005264.1 + 106011 0.66 0.882031
Target:  5'- gCCACGAGccgcuAGCu--AG-GGCCGCCGc- -3'
miRNA:   3'- -GGUGCUC-----UCGucuUCuCCGGCGGUaa -5'
24515 5' -56.1 NC_005264.1 + 19519 0.66 0.882031
Target:  5'- aCgACGAGaAGCucGGGAcGGCCGCCGc- -3'
miRNA:   3'- -GgUGCUC-UCGucUUCU-CCGGCGGUaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.