miRNA display CGI


Results 1 - 20 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24516 3' -53.5 NC_005264.1 + 55272 0.66 0.967058
Target:  5'- ---aAGAGCUGgggCGCGCUagGCCGCACg -3'
miRNA:   3'- ucagUUUCGAUag-GUGUGG--CGGCGUG- -5'
24516 3' -53.5 NC_005264.1 + 60707 0.66 0.967058
Target:  5'- aGGUCAgcAGGUUGUuggCCGCggccucguACCGCCGC-Ca -3'
miRNA:   3'- -UCAGU--UUCGAUA---GGUG--------UGGCGGCGuG- -5'
24516 3' -53.5 NC_005264.1 + 39200 0.66 0.967058
Target:  5'- -uUCGAGaacGCgc-CUACGCCGCCGCGg -3'
miRNA:   3'- ucAGUUU---CGauaGGUGUGGCGGCGUg -5'
24516 3' -53.5 NC_005264.1 + 158227 0.66 0.967058
Target:  5'- -uUCGAGaacGCgc-CUACGCCGCCGCGg -3'
miRNA:   3'- ucAGUUU---CGauaGGUGUGGCGGCGUg -5'
24516 3' -53.5 NC_005264.1 + 20127 0.66 0.967058
Target:  5'- uAGUCGAcgaugcgggcaGGCgauggCGCGCCGCCgGCGCc -3'
miRNA:   3'- -UCAGUU-----------UCGauag-GUGUGGCGG-CGUG- -5'
24516 3' -53.5 NC_005264.1 + 3466 0.66 0.967058
Target:  5'- gGGUCucggGGGCgAUggGCuuGCCGCCGCACg -3'
miRNA:   3'- -UCAGu---UUCGaUAggUG--UGGCGGCGUG- -5'
24516 3' -53.5 NC_005264.1 + 24346 0.66 0.967058
Target:  5'- cGG-CGGGGCaUAUCCcCGCCGCUcugGCAUg -3'
miRNA:   3'- -UCaGUUUCG-AUAGGuGUGGCGG---CGUG- -5'
24516 3' -53.5 NC_005264.1 + 73293 0.66 0.967058
Target:  5'- ---aAAAGCUcgCCggACACUGCcCGCGCc -3'
miRNA:   3'- ucagUUUCGAuaGG--UGUGGCG-GCGUG- -5'
24516 3' -53.5 NC_005264.1 + 83714 0.66 0.967058
Target:  5'- gAGaaGGGGCaagCgCACGCCGCCGUGCc -3'
miRNA:   3'- -UCagUUUCGauaG-GUGUGGCGGCGUG- -5'
24516 3' -53.5 NC_005264.1 + 154500 0.66 0.967058
Target:  5'- cGGUUAAGGuCUGcggggCGCACaUGCCGCGCg -3'
miRNA:   3'- -UCAGUUUC-GAUag---GUGUG-GCGGCGUG- -5'
24516 3' -53.5 NC_005264.1 + 122493 0.66 0.967058
Target:  5'- gGGUCucggGGGCgAUggGCuuGCCGCCGCACg -3'
miRNA:   3'- -UCAGu---UUCGaUAggUG--UGGCGGCGUG- -5'
24516 3' -53.5 NC_005264.1 + 87099 0.66 0.967058
Target:  5'- uGUCAucGCUGgugaaCCGCaACUGCCacGCGCu -3'
miRNA:   3'- uCAGUuuCGAUa----GGUG-UGGCGG--CGUG- -5'
24516 3' -53.5 NC_005264.1 + 97690 0.66 0.965097
Target:  5'- cGGUgGGAGCUugcuGUCUcccuaauaguaagcaGCGCCGCCagGCGCc -3'
miRNA:   3'- -UCAgUUUCGA----UAGG---------------UGUGGCGG--CGUG- -5'
24516 3' -53.5 NC_005264.1 + 6486 0.66 0.963744
Target:  5'- gAGUCuGAAGU--UCguUGCUGCCGCACu -3'
miRNA:   3'- -UCAG-UUUCGauAGguGUGGCGGCGUG- -5'
24516 3' -53.5 NC_005264.1 + 131776 0.66 0.963744
Target:  5'- ---gGAGGCUcgcucgccugccGUCCGCAacgcaGCCGCACg -3'
miRNA:   3'- ucagUUUCGA------------UAGGUGUgg---CGGCGUG- -5'
24516 3' -53.5 NC_005264.1 + 108519 0.66 0.963744
Target:  5'- cGUCGu-GCg--CCAcCACCGUgGCACa -3'
miRNA:   3'- uCAGUuuCGauaGGU-GUGGCGgCGUG- -5'
24516 3' -53.5 NC_005264.1 + 105327 0.66 0.963744
Target:  5'- aAGgggCAauGAGC--UCU-CGCCGCCGCGCg -3'
miRNA:   3'- -UCa--GU--UUCGauAGGuGUGGCGGCGUG- -5'
24516 3' -53.5 NC_005264.1 + 73953 0.66 0.963744
Target:  5'- cGUCuucuGCU-UCUugGCUGCCGCGg -3'
miRNA:   3'- uCAGuuu-CGAuAGGugUGGCGGCGUg -5'
24516 3' -53.5 NC_005264.1 + 46276 0.66 0.963744
Target:  5'- gGGUCGccGAGCUgcgcAUCgACGCCGCCu--- -3'
miRNA:   3'- -UCAGU--UUCGA----UAGgUGUGGCGGcgug -5'
24516 3' -53.5 NC_005264.1 + 12750 0.66 0.963744
Target:  5'- ---gGAGGCUcgcucgccugccGUCCGCAacgcaGCCGCACg -3'
miRNA:   3'- ucagUUUCGA------------UAGGUGUgg---CGGCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.