Results 1 - 20 of 138 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
24516 | 3' | -53.5 | NC_005264.1 | + | 55272 | 0.66 | 0.967058 |
Target: 5'- ---aAGAGCUGgggCGCGCUagGCCGCACg -3' miRNA: 3'- ucagUUUCGAUag-GUGUGG--CGGCGUG- -5' |
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24516 | 3' | -53.5 | NC_005264.1 | + | 108519 | 0.66 | 0.963744 |
Target: 5'- cGUCGu-GCg--CCAcCACCGUgGCACa -3' miRNA: 3'- uCAGUuuCGauaGGU-GUGGCGgCGUG- -5' |
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24516 | 3' | -53.5 | NC_005264.1 | + | 30345 | 0.66 | 0.960204 |
Target: 5'- uAGUCAGcAGCUGcccugcggCCACgugGCUGCCGUAa -3' miRNA: 3'- -UCAGUU-UCGAUa-------GGUG---UGGCGGCGUg -5' |
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24516 | 3' | -53.5 | NC_005264.1 | + | 131776 | 0.66 | 0.963744 |
Target: 5'- ---gGAGGCUcgcucgccugccGUCCGCAacgcaGCCGCACg -3' miRNA: 3'- ucagUUUCGA------------UAGGUGUgg---CGGCGUG- -5' |
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24516 | 3' | -53.5 | NC_005264.1 | + | 63798 | 0.66 | 0.956432 |
Target: 5'- -cUCAAucGC-GUCCACGauuuCUGCCGCGCg -3' miRNA: 3'- ucAGUUu-CGaUAGGUGU----GGCGGCGUG- -5' |
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24516 | 3' | -53.5 | NC_005264.1 | + | 34871 | 0.66 | 0.952424 |
Target: 5'- -cUCuauGGCUAaccgguUCCAgGCCGCCGCc- -3' miRNA: 3'- ucAGuu-UCGAU------AGGUgUGGCGGCGug -5' |
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24516 | 3' | -53.5 | NC_005264.1 | + | 158227 | 0.66 | 0.967058 |
Target: 5'- -uUCGAGaacGCgc-CUACGCCGCCGCGg -3' miRNA: 3'- ucAGUUU---CGauaGGUGUGGCGGCGUg -5' |
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24516 | 3' | -53.5 | NC_005264.1 | + | 122493 | 0.66 | 0.967058 |
Target: 5'- gGGUCucggGGGCgAUggGCuuGCCGCCGCACg -3' miRNA: 3'- -UCAGu---UUCGaUAggUG--UGGCGGCGUG- -5' |
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24516 | 3' | -53.5 | NC_005264.1 | + | 60707 | 0.66 | 0.967058 |
Target: 5'- aGGUCAgcAGGUUGUuggCCGCggccucguACCGCCGC-Ca -3' miRNA: 3'- -UCAGU--UUCGAUA---GGUG--------UGGCGGCGuG- -5' |
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24516 | 3' | -53.5 | NC_005264.1 | + | 140626 | 0.66 | 0.960204 |
Target: 5'- --aCGAGGCgacgacUCCAC-UUGCCGCGCa -3' miRNA: 3'- ucaGUUUCGau----AGGUGuGGCGGCGUG- -5' |
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24516 | 3' | -53.5 | NC_005264.1 | + | 126181 | 0.66 | 0.960204 |
Target: 5'- uGGUCGcGGCcagGUCCAU-CCG-CGCACg -3' miRNA: 3'- -UCAGUuUCGa--UAGGUGuGGCgGCGUG- -5' |
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24516 | 3' | -53.5 | NC_005264.1 | + | 87099 | 0.66 | 0.967058 |
Target: 5'- uGUCAucGCUGgugaaCCGCaACUGCCacGCGCu -3' miRNA: 3'- uCAGUuuCGAUa----GGUG-UGGCGG--CGUG- -5' |
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24516 | 3' | -53.5 | NC_005264.1 | + | 6486 | 0.66 | 0.963744 |
Target: 5'- gAGUCuGAAGU--UCguUGCUGCCGCACu -3' miRNA: 3'- -UCAG-UUUCGauAGguGUGGCGGCGUG- -5' |
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24516 | 3' | -53.5 | NC_005264.1 | + | 97690 | 0.66 | 0.965097 |
Target: 5'- cGGUgGGAGCUugcuGUCUcccuaauaguaagcaGCGCCGCCagGCGCc -3' miRNA: 3'- -UCAgUUUCGA----UAGG---------------UGUGGCGG--CGUG- -5' |
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24516 | 3' | -53.5 | NC_005264.1 | + | 132324 | 0.66 | 0.960204 |
Target: 5'- gGGUCGugGAGCUccCCGgaggACgGCCGCGCg -3' miRNA: 3'- -UCAGU--UUCGAuaGGUg---UGgCGGCGUG- -5' |
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24516 | 3' | -53.5 | NC_005264.1 | + | 119713 | 0.66 | 0.952424 |
Target: 5'- cGUgCuuAGgUGUCCagGCACCGCgCGUACg -3' miRNA: 3'- uCA-GuuUCgAUAGG--UGUGGCG-GCGUG- -5' |
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24516 | 3' | -53.5 | NC_005264.1 | + | 73953 | 0.66 | 0.963744 |
Target: 5'- cGUCuucuGCU-UCUugGCUGCCGCGg -3' miRNA: 3'- uCAGuuu-CGAuAGGugUGGCGGCGUg -5' |
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24516 | 3' | -53.5 | NC_005264.1 | + | 42992 | 0.66 | 0.960204 |
Target: 5'- cGUCGAGGCaUAUgCAgCACgGCUGCGu -3' miRNA: 3'- uCAGUUUCG-AUAgGU-GUGgCGGCGUg -5' |
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24516 | 3' | -53.5 | NC_005264.1 | + | 36713 | 0.66 | 0.960204 |
Target: 5'- --gCAAGuGCcAUCgGCucaGCCGCCGCGCa -3' miRNA: 3'- ucaGUUU-CGaUAGgUG---UGGCGGCGUG- -5' |
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24516 | 3' | -53.5 | NC_005264.1 | + | 154500 | 0.66 | 0.967058 |
Target: 5'- cGGUUAAGGuCUGcggggCGCACaUGCCGCGCg -3' miRNA: 3'- -UCAGUUUC-GAUag---GUGUG-GCGGCGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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