miRNA display CGI


Results 1 - 20 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24516 3' -53.5 NC_005264.1 + 16042 1.09 0.004589
Target:  5'- gAGUCAAAGCUAUCCACACCGCCGCACc -3'
miRNA:   3'- -UCAGUUUCGAUAGGUGUGGCGGCGUG- -5'
24516 3' -53.5 NC_005264.1 + 16833 0.79 0.379984
Target:  5'- uGGUCAGAGgauaCUAuacuUCCGCcaGCCGCCGCGCa -3'
miRNA:   3'- -UCAGUUUC----GAU----AGGUG--UGGCGGCGUG- -5'
24516 3' -53.5 NC_005264.1 + 64503 0.77 0.480004
Target:  5'- gAGUCGccuGGaccgcgcuguuCUGUCCGCGCCGCCGCGg -3'
miRNA:   3'- -UCAGUu--UC-----------GAUAGGUGUGGCGGCGUg -5'
24516 3' -53.5 NC_005264.1 + 58734 0.76 0.509476
Target:  5'- -uUCAGGGC-AUCCGCgGCCGCCGCuGCg -3'
miRNA:   3'- ucAGUUUCGaUAGGUG-UGGCGGCG-UG- -5'
24516 3' -53.5 NC_005264.1 + 162580 0.76 0.509476
Target:  5'- aAGU--GGGCUucugccgcGUCCAgCGCCGCCGCACa -3'
miRNA:   3'- -UCAguUUCGA--------UAGGU-GUGGCGGCGUG- -5'
24516 3' -53.5 NC_005264.1 + 13403 0.75 0.58083
Target:  5'- cGcCGcAGCUcUCCGCACCGgCGCGCg -3'
miRNA:   3'- uCaGUuUCGAuAGGUGUGGCgGCGUG- -5'
24516 3' -53.5 NC_005264.1 + 132430 0.75 0.58083
Target:  5'- cGcCGcAGCUcUCCGCACCGgCGCGCg -3'
miRNA:   3'- uCaGUuUCGAuAGGUGUGGCgGCGUG- -5'
24516 3' -53.5 NC_005264.1 + 68883 0.74 0.591231
Target:  5'- uGGUUAGAaucGCUuUCCACAcuCCGCUGCGCg -3'
miRNA:   3'- -UCAGUUU---CGAuAGGUGU--GGCGGCGUG- -5'
24516 3' -53.5 NC_005264.1 + 121913 0.74 0.601663
Target:  5'- gGGUCuguucaGAAGCUAgcCCGCGCCGCCGaCAg -3'
miRNA:   3'- -UCAG------UUUCGAUa-GGUGUGGCGGC-GUg -5'
24516 3' -53.5 NC_005264.1 + 59777 0.74 0.621544
Target:  5'- uGGcCGuGGCUGUCCACGgccguguCCGCCGCGg -3'
miRNA:   3'- -UCaGUuUCGAUAGGUGU-------GGCGGCGUg -5'
24516 3' -53.5 NC_005264.1 + 30060 0.74 0.622591
Target:  5'- cGUUAAuuAGCcccucGUCgGCGCCGCCGCGCc -3'
miRNA:   3'- uCAGUU--UCGa----UAGgUGUGGCGGCGUG- -5'
24516 3' -53.5 NC_005264.1 + 85043 0.74 0.643549
Target:  5'- cGUCAAuGCcGUCUGCGCCGCgGUGCg -3'
miRNA:   3'- uCAGUUuCGaUAGGUGUGGCGgCGUG- -5'
24516 3' -53.5 NC_005264.1 + 133690 0.73 0.654018
Target:  5'- -cUCGccGCgGUCCuuGCCGCCGCGCa -3'
miRNA:   3'- ucAGUuuCGaUAGGugUGGCGGCGUG- -5'
24516 3' -53.5 NC_005264.1 + 64129 0.73 0.664469
Target:  5'- uGUCGccgaucAGGCUcgCCACGgCGCCGCGa -3'
miRNA:   3'- uCAGU------UUCGAuaGGUGUgGCGGCGUg -5'
24516 3' -53.5 NC_005264.1 + 46400 0.73 0.673851
Target:  5'- cGUCAGGGCcagGUCCGCcgcgaggcugcacGCCGCCcuGCGCu -3'
miRNA:   3'- uCAGUUUCGa--UAGGUG-------------UGGCGG--CGUG- -5'
24516 3' -53.5 NC_005264.1 + 97739 0.73 0.674892
Target:  5'- ---aAGAGCUGUCCgACAUCGCCaaGCACu -3'
miRNA:   3'- ucagUUUCGAUAGG-UGUGGCGG--CGUG- -5'
24516 3' -53.5 NC_005264.1 + 132721 0.73 0.674892
Target:  5'- cGcCGcAGCUcgGUCCGCGCCGCCcGCAUc -3'
miRNA:   3'- uCaGUuUCGA--UAGGUGUGGCGG-CGUG- -5'
24516 3' -53.5 NC_005264.1 + 6879 0.73 0.685279
Target:  5'- cAGcCAGAGC-GUCCGCGa-GCCGCGCa -3'
miRNA:   3'- -UCaGUUUCGaUAGGUGUggCGGCGUG- -5'
24516 3' -53.5 NC_005264.1 + 152853 0.73 0.69562
Target:  5'- cGUCGAgGGCUcguugggcUCgGCAUCGCCGCACg -3'
miRNA:   3'- uCAGUU-UCGAu-------AGgUGUGGCGGCGUG- -5'
24516 3' -53.5 NC_005264.1 + 87963 0.73 0.69562
Target:  5'- cGUCGAAGCca--CGCACCGCgGUGCg -3'
miRNA:   3'- uCAGUUUCGauagGUGUGGCGgCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.