miRNA display CGI


Results 21 - 40 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24516 3' -53.5 NC_005264.1 + 108519 0.66 0.963744
Target:  5'- cGUCGu-GCg--CCAcCACCGUgGCACa -3'
miRNA:   3'- uCAGUuuCGauaGGU-GUGGCGgCGUG- -5'
24516 3' -53.5 NC_005264.1 + 73953 0.66 0.963744
Target:  5'- cGUCuucuGCU-UCUugGCUGCCGCGg -3'
miRNA:   3'- uCAGuuu-CGAuAGGugUGGCGGCGUg -5'
24516 3' -53.5 NC_005264.1 + 55793 0.66 0.960568
Target:  5'- uGUCGccugGGGUUuguuccgcccaaaauUCCACAUCGCCGCGg -3'
miRNA:   3'- uCAGU----UUCGAu--------------AGGUGUGGCGGCGUg -5'
24516 3' -53.5 NC_005264.1 + 100224 0.66 0.960204
Target:  5'- gGGgcgCAGuuGCUcggaacGUCCGCGCCGCuacuuCGCGCg -3'
miRNA:   3'- -UCa--GUUu-CGA------UAGGUGUGGCG-----GCGUG- -5'
24516 3' -53.5 NC_005264.1 + 69040 0.66 0.960204
Target:  5'- gAGUCGAucuCUuuggCCGCgGCCGCCGgGCa -3'
miRNA:   3'- -UCAGUUuc-GAua--GGUG-UGGCGGCgUG- -5'
24516 3' -53.5 NC_005264.1 + 102439 0.66 0.960204
Target:  5'- uGGUUccuGGCccUUCACGCCGCCGUg- -3'
miRNA:   3'- -UCAGuu-UCGauAGGUGUGGCGGCGug -5'
24516 3' -53.5 NC_005264.1 + 36713 0.66 0.960204
Target:  5'- --gCAAGuGCcAUCgGCucaGCCGCCGCGCa -3'
miRNA:   3'- ucaGUUU-CGaUAGgUG---UGGCGGCGUG- -5'
24516 3' -53.5 NC_005264.1 + 7154 0.66 0.960204
Target:  5'- uGGUCGcGGCcagGUCCAU-CCG-CGCACg -3'
miRNA:   3'- -UCAGUuUCGa--UAGGUGuGGCgGCGUG- -5'
24516 3' -53.5 NC_005264.1 + 86167 0.66 0.960204
Target:  5'- gGG-CAGAGgUAUCUu--CUGCCGCACc -3'
miRNA:   3'- -UCaGUUUCgAUAGGuguGGCGGCGUG- -5'
24516 3' -53.5 NC_005264.1 + 13297 0.66 0.960204
Target:  5'- gGGUCGugGAGCUccCCGgaggACgGCCGCGCg -3'
miRNA:   3'- -UCAGU--UUCGAuaGGUg---UGgCGGCGUG- -5'
24516 3' -53.5 NC_005264.1 + 30345 0.66 0.960204
Target:  5'- uAGUCAGcAGCUGcccugcggCCACgugGCUGCCGUAa -3'
miRNA:   3'- -UCAGUU-UCGAUa-------GGUG---UGGCGGCGUg -5'
24516 3' -53.5 NC_005264.1 + 132324 0.66 0.960204
Target:  5'- gGGUCGugGAGCUccCCGgaggACgGCCGCGCg -3'
miRNA:   3'- -UCAGU--UUCGAuaGGUg---UGgCGGCGUG- -5'
24516 3' -53.5 NC_005264.1 + 140626 0.66 0.960204
Target:  5'- --aCGAGGCgacgacUCCAC-UUGCCGCGCa -3'
miRNA:   3'- ucaGUUUCGau----AGGUGuGGCGGCGUG- -5'
24516 3' -53.5 NC_005264.1 + 42992 0.66 0.960204
Target:  5'- cGUCGAGGCaUAUgCAgCACgGCUGCGu -3'
miRNA:   3'- uCAGUUUCG-AUAgGU-GUGgCGGCGUg -5'
24516 3' -53.5 NC_005264.1 + 126181 0.66 0.960204
Target:  5'- uGGUCGcGGCcagGUCCAU-CCG-CGCACg -3'
miRNA:   3'- -UCAGUuUCGa--UAGGUGuGGCgGCGUG- -5'
24516 3' -53.5 NC_005264.1 + 146255 0.66 0.956432
Target:  5'- gGGUCGgccgGAGUcAUgUGCGCCGCCGCc- -3'
miRNA:   3'- -UCAGU----UUCGaUAgGUGUGGCGGCGug -5'
24516 3' -53.5 NC_005264.1 + 102857 0.66 0.956432
Target:  5'- cGUCuc-GCUcgCgGcCACCGCCGCGu -3'
miRNA:   3'- uCAGuuuCGAuaGgU-GUGGCGGCGUg -5'
24516 3' -53.5 NC_005264.1 + 106425 0.66 0.956432
Target:  5'- --cCGAAGC--UCgACGgCGCCGCGCu -3'
miRNA:   3'- ucaGUUUCGauAGgUGUgGCGGCGUG- -5'
24516 3' -53.5 NC_005264.1 + 63798 0.66 0.956432
Target:  5'- -cUCAAucGC-GUCCACGauuuCUGCCGCGCg -3'
miRNA:   3'- ucAGUUu-CGaUAGGUGU----GGCGGCGUG- -5'
24516 3' -53.5 NC_005264.1 + 119713 0.66 0.952424
Target:  5'- cGUgCuuAGgUGUCCagGCACCGCgCGUACg -3'
miRNA:   3'- uCA-GuuUCgAUAGG--UGUGGCG-GCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.