miRNA display CGI


Results 1 - 20 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24516 3' -53.5 NC_005264.1 + 686 0.66 0.952424
Target:  5'- cGUgCuuAGgUGUCCagGCACCGCgCGUACg -3'
miRNA:   3'- uCA-GuuUCgAUAGG--UGUGGCG-GCGUG- -5'
24516 3' -53.5 NC_005264.1 + 3466 0.66 0.967058
Target:  5'- gGGUCucggGGGCgAUggGCuuGCCGCCGCACg -3'
miRNA:   3'- -UCAGu---UUCGaUAggUG--UGGCGGCGUG- -5'
24516 3' -53.5 NC_005264.1 + 4994 0.67 0.928718
Target:  5'- cGUCGucGUUcucGUCCGCGCCggggucGCCGCGg -3'
miRNA:   3'- uCAGUuuCGA---UAGGUGUGG------CGGCGUg -5'
24516 3' -53.5 NC_005264.1 + 6486 0.66 0.963744
Target:  5'- gAGUCuGAAGU--UCguUGCUGCCGCACu -3'
miRNA:   3'- -UCAG-UUUCGauAGguGUGGCGGCGUG- -5'
24516 3' -53.5 NC_005264.1 + 6879 0.73 0.685279
Target:  5'- cAGcCAGAGC-GUCCGCGa-GCCGCGCa -3'
miRNA:   3'- -UCaGUUUCGaUAGGUGUggCGGCGUG- -5'
24516 3' -53.5 NC_005264.1 + 7154 0.66 0.960204
Target:  5'- uGGUCGcGGCcagGUCCAU-CCG-CGCACg -3'
miRNA:   3'- -UCAGUuUCGa--UAGGUGuGGCgGCGUG- -5'
24516 3' -53.5 NC_005264.1 + 11301 0.7 0.812556
Target:  5'- aGGgUAGGGC-GUCCACGCCGCC-CAUg -3'
miRNA:   3'- -UCaGUUUCGaUAGGUGUGGCGGcGUG- -5'
24516 3' -53.5 NC_005264.1 + 12200 0.69 0.88509
Target:  5'- uGGUCGcaGGGCgAUgCGCGCCGCCuCGCc -3'
miRNA:   3'- -UCAGU--UUCGaUAgGUGUGGCGGcGUG- -5'
24516 3' -53.5 NC_005264.1 + 12750 0.66 0.963744
Target:  5'- ---gGAGGCUcgcucgccugccGUCCGCAacgcaGCCGCACg -3'
miRNA:   3'- ucagUUUCGA------------UAGGUGUgg---CGGCGUG- -5'
24516 3' -53.5 NC_005264.1 + 13297 0.66 0.960204
Target:  5'- gGGUCGugGAGCUccCCGgaggACgGCCGCGCg -3'
miRNA:   3'- -UCAGU--UUCGAuaGGUg---UGgCGGCGUG- -5'
24516 3' -53.5 NC_005264.1 + 13403 0.75 0.58083
Target:  5'- cGcCGcAGCUcUCCGCACCGgCGCGCg -3'
miRNA:   3'- uCaGUuUCGAuAGGUGUGGCgGCGUG- -5'
24516 3' -53.5 NC_005264.1 + 14579 0.69 0.854936
Target:  5'- gGG-CAAAuCUGUCCcgugaaACGCCGCCGCGa -3'
miRNA:   3'- -UCaGUUUcGAUAGG------UGUGGCGGCGUg -5'
24516 3' -53.5 NC_005264.1 + 15135 0.72 0.716125
Target:  5'- gGGgaauGGuCUGUCUGCACCGCCGCGu -3'
miRNA:   3'- -UCaguuUC-GAUAGGUGUGGCGGCGUg -5'
24516 3' -53.5 NC_005264.1 + 16042 1.09 0.004589
Target:  5'- gAGUCAAAGCUAUCCACACCGCCGCACc -3'
miRNA:   3'- -UCAGUUUCGAUAGGUGUGGCGGCGUG- -5'
24516 3' -53.5 NC_005264.1 + 16833 0.79 0.379984
Target:  5'- uGGUCAGAGgauaCUAuacuUCCGCcaGCCGCCGCGCa -3'
miRNA:   3'- -UCAGUUUC----GAU----AGGUG--UGGCGGCGUG- -5'
24516 3' -53.5 NC_005264.1 + 19159 0.67 0.938944
Target:  5'- cGGcCAAAGCUGgaacCCACAUCGaCGCGu -3'
miRNA:   3'- -UCaGUUUCGAUa---GGUGUGGCgGCGUg -5'
24516 3' -53.5 NC_005264.1 + 20127 0.66 0.967058
Target:  5'- uAGUCGAcgaugcgggcaGGCgauggCGCGCCGCCgGCGCc -3'
miRNA:   3'- -UCAGUU-----------UCGauag-GUGUGGCGG-CGUG- -5'
24516 3' -53.5 NC_005264.1 + 22730 0.67 0.938944
Target:  5'- aAGUCAAcGCUGaagaC-CACCGUCGCAUc -3'
miRNA:   3'- -UCAGUUuCGAUag--GuGUGGCGGCGUG- -5'
24516 3' -53.5 NC_005264.1 + 24165 0.67 0.938944
Target:  5'- gAGUCGAGGCUG-CU--GCgGCCGCGg -3'
miRNA:   3'- -UCAGUUUCGAUaGGugUGgCGGCGUg -5'
24516 3' -53.5 NC_005264.1 + 24276 0.66 0.963744
Target:  5'- uAGUCGguaGGGUaAUCC-CGCCGCaCGCGg -3'
miRNA:   3'- -UCAGU---UUCGaUAGGuGUGGCG-GCGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.