miRNA display CGI


Results 1 - 20 of 138 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24516 3' -53.5 NC_005264.1 + 159644 0.7 0.846854
Target:  5'- gGGUCcugcgaaauAAGCccuuccCCGCGCCGUCGCGCg -3'
miRNA:   3'- -UCAGu--------UUCGaua---GGUGUGGCGGCGUG- -5'
24516 3' -53.5 NC_005264.1 + 152853 0.73 0.69562
Target:  5'- cGUCGAgGGCUcguugggcUCgGCAUCGCCGCACg -3'
miRNA:   3'- uCAGUU-UCGAu-------AGgUGUGGCGGCGUG- -5'
24516 3' -53.5 NC_005264.1 + 53267 0.71 0.80353
Target:  5'- uGUCuggcuuGCUGUcCCGCGgCGCCGCAg -3'
miRNA:   3'- uCAGuuu---CGAUA-GGUGUgGCGGCGUg -5'
24516 3' -53.5 NC_005264.1 + 11301 0.7 0.812556
Target:  5'- aGGgUAGGGC-GUCCACGCCGCC-CAUg -3'
miRNA:   3'- -UCaGUUUCGaUAGGUGUGGCGGcGUG- -5'
24516 3' -53.5 NC_005264.1 + 37552 0.7 0.812556
Target:  5'- cAGgCGAAGCgacagCGCGCCGCCGCGg -3'
miRNA:   3'- -UCaGUUUCGauag-GUGUGGCGGCGUg -5'
24516 3' -53.5 NC_005264.1 + 59119 0.7 0.821409
Target:  5'- cGcCGccGCUGaugCCGCGCCGCCGCu- -3'
miRNA:   3'- uCaGUuuCGAUa--GGUGUGGCGGCGug -5'
24516 3' -53.5 NC_005264.1 + 152290 0.7 0.821409
Target:  5'- cGG-CGAAcGCgcgAUCCGCGCCccugagggcggcGCCGCACa -3'
miRNA:   3'- -UCaGUUU-CGa--UAGGUGUGG------------CGGCGUG- -5'
24516 3' -53.5 NC_005264.1 + 84446 0.7 0.838566
Target:  5'- --aCGAAGCUGuUCCAgAUUGCCGCGu -3'
miRNA:   3'- ucaGUUUCGAU-AGGUgUGGCGGCGUg -5'
24516 3' -53.5 NC_005264.1 + 149380 0.7 0.838566
Target:  5'- gAGUCcccgcaGGAGCcccuUCgGCGCCGCCGCGu -3'
miRNA:   3'- -UCAG------UUUCGau--AGgUGUGGCGGCGUg -5'
24516 3' -53.5 NC_005264.1 + 87963 0.73 0.69562
Target:  5'- cGUCGAAGCca--CGCACCGCgGUGCg -3'
miRNA:   3'- uCAGUUUCGauagGUGUGGCGgCGUG- -5'
24516 3' -53.5 NC_005264.1 + 6879 0.73 0.685279
Target:  5'- cAGcCAGAGC-GUCCGCGa-GCCGCGCa -3'
miRNA:   3'- -UCaGUUUCGaUAGGUGUggCGGCGUG- -5'
24516 3' -53.5 NC_005264.1 + 97739 0.73 0.674892
Target:  5'- ---aAGAGCUGUCCgACAUCGCCaaGCACu -3'
miRNA:   3'- ucagUUUCGAUAGG-UGUGGCGG--CGUG- -5'
24516 3' -53.5 NC_005264.1 + 64503 0.77 0.480004
Target:  5'- gAGUCGccuGGaccgcgcuguuCUGUCCGCGCCGCCGCGg -3'
miRNA:   3'- -UCAGUu--UC-----------GAUAGGUGUGGCGGCGUg -5'
24516 3' -53.5 NC_005264.1 + 58734 0.76 0.509476
Target:  5'- -uUCAGGGC-AUCCGCgGCCGCCGCuGCg -3'
miRNA:   3'- ucAGUUUCGaUAGGUG-UGGCGGCG-UG- -5'
24516 3' -53.5 NC_005264.1 + 132430 0.75 0.58083
Target:  5'- cGcCGcAGCUcUCCGCACCGgCGCGCg -3'
miRNA:   3'- uCaGUuUCGAuAGGUGUGGCgGCGUG- -5'
24516 3' -53.5 NC_005264.1 + 59777 0.74 0.621544
Target:  5'- uGGcCGuGGCUGUCCACGgccguguCCGCCGCGg -3'
miRNA:   3'- -UCaGUuUCGAUAGGUGU-------GGCGGCGUg -5'
24516 3' -53.5 NC_005264.1 + 30060 0.74 0.622591
Target:  5'- cGUUAAuuAGCcccucGUCgGCGCCGCCGCGCc -3'
miRNA:   3'- uCAGUU--UCGa----UAGgUGUGGCGGCGUG- -5'
24516 3' -53.5 NC_005264.1 + 133690 0.73 0.654018
Target:  5'- -cUCGccGCgGUCCuuGCCGCCGCGCa -3'
miRNA:   3'- ucAGUuuCGaUAGGugUGGCGGCGUG- -5'
24516 3' -53.5 NC_005264.1 + 64129 0.73 0.664469
Target:  5'- uGUCGccgaucAGGCUcgCCACGgCGCCGCGa -3'
miRNA:   3'- uCAGU------UUCGAuaGGUGUgGCGGCGUg -5'
24516 3' -53.5 NC_005264.1 + 46400 0.73 0.673851
Target:  5'- cGUCAGGGCcagGUCCGCcgcgaggcugcacGCCGCCcuGCGCu -3'
miRNA:   3'- uCAGUUUCGa--UAGGUG-------------UGGCGG--CGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.