miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24516 5' -60.9 NC_005264.1 + 143969 0.66 0.741025
Target:  5'- gCCGCGguggcaauuuucuUGGCGCUcGUaacaUGUUGCUuGGGUa -3'
miRNA:   3'- -GGCGC-------------GCCGCGAaCG----ACAACGG-CCCA- -5'
24516 5' -60.9 NC_005264.1 + 142430 0.66 0.740086
Target:  5'- aCGcCGCGGCGCggucuacuuucGUgGUUGCgGGGg -3'
miRNA:   3'- gGC-GCGCCGCGaa---------CGaCAACGgCCCa -5'
24516 5' -60.9 NC_005264.1 + 132477 0.66 0.732549
Target:  5'- aCGCgGCGGCGCcgaagggGCUccUGCgGGGa -3'
miRNA:   3'- gGCG-CGCCGCGaa-----CGAcaACGgCCCa -5'
24516 5' -60.9 NC_005264.1 + 13450 0.66 0.732549
Target:  5'- aCGCgGCGGCGCcgaagggGCUccUGCgGGGa -3'
miRNA:   3'- gGCG-CGCCGCGaa-----CGAcaACGgCCCa -5'
24516 5' -60.9 NC_005264.1 + 18076 0.66 0.723054
Target:  5'- gCGCGCGG-GCauuuaauucUGCUGUuaUGCCGGc- -3'
miRNA:   3'- gGCGCGCCgCGa--------ACGACA--ACGGCCca -5'
24516 5' -60.9 NC_005264.1 + 89803 0.66 0.723054
Target:  5'- aCCGC-CGGCGCUUuccgcGCUaGUgaccGCCGuGGg -3'
miRNA:   3'- -GGCGcGCCGCGAA-----CGA-CAa---CGGC-CCa -5'
24516 5' -60.9 NC_005264.1 + 74106 0.66 0.723054
Target:  5'- -gGCGCGGuCGac-GCUGUcgcgGCUGGGg -3'
miRNA:   3'- ggCGCGCC-GCgaaCGACAa---CGGCCCa -5'
24516 5' -60.9 NC_005264.1 + 135573 0.66 0.713487
Target:  5'- gCCGCGCGuCGCUcGCgacuacggGUggGUCGGGa -3'
miRNA:   3'- -GGCGCGCcGCGAaCGa-------CAa-CGGCCCa -5'
24516 5' -60.9 NC_005264.1 + 156188 0.66 0.713487
Target:  5'- gCGUgGCGGCGCcgGCUauaUGUCGGGg -3'
miRNA:   3'- gGCG-CGCCGCGaaCGAca-ACGGCCCa -5'
24516 5' -60.9 NC_005264.1 + 139943 0.66 0.703856
Target:  5'- aCCGaCGCGGUGC-UGCUaucgUGCCcgaaccagGGGUc -3'
miRNA:   3'- -GGC-GCGCCGCGaACGAca--ACGG--------CCCA- -5'
24516 5' -60.9 NC_005264.1 + 40784 0.66 0.694168
Target:  5'- aCGCaGCGGCGC-UGCaaacUGCgGGGg -3'
miRNA:   3'- gGCG-CGCCGCGaACGaca-ACGgCCCa -5'
24516 5' -60.9 NC_005264.1 + 123495 0.66 0.694168
Target:  5'- gCCGCGCGGuUGCUggGCgaugUGCuCGcGGUg -3'
miRNA:   3'- -GGCGCGCC-GCGAa-CGaca-ACG-GC-CCA- -5'
24516 5' -60.9 NC_005264.1 + 159810 0.66 0.694168
Target:  5'- aCGCaGCGGCGC-UGCaaacUGCgGGGg -3'
miRNA:   3'- gGCG-CGCCGCGaACGaca-ACGgCCCa -5'
24516 5' -60.9 NC_005264.1 + 72698 0.66 0.694168
Target:  5'- gUGaCGCGGCGCaaUGCU-UUGCCuGGGa -3'
miRNA:   3'- gGC-GCGCCGCGa-ACGAcAACGG-CCCa -5'
24516 5' -60.9 NC_005264.1 + 8382 0.66 0.688333
Target:  5'- gCCGgaCGCGGCGCgUugaagcugccggagcUGUUGUUGUCGaGGUu -3'
miRNA:   3'- -GGC--GCGCCGCG-A---------------ACGACAACGGC-CCA- -5'
24516 5' -60.9 NC_005264.1 + 127409 0.66 0.688333
Target:  5'- gCCGgaCGCGGCGCgUugaagcugccggagcUGUUGUUGUCGaGGUu -3'
miRNA:   3'- -GGC--GCGCCGCG-A---------------ACGACAACGGC-CCA- -5'
24516 5' -60.9 NC_005264.1 + 75077 0.67 0.664849
Target:  5'- gCCGCugguucuucGCGGCGCUgcgGCaGgcGCCGGc- -3'
miRNA:   3'- -GGCG---------CGCCGCGAa--CGaCaaCGGCCca -5'
24516 5' -60.9 NC_005264.1 + 155262 0.67 0.664849
Target:  5'- uCCGCaGCGGCGCgggGUaGgcgGCgGGGa -3'
miRNA:   3'- -GGCG-CGCCGCGaa-CGaCaa-CGgCCCa -5'
24516 5' -60.9 NC_005264.1 + 77456 0.67 0.662884
Target:  5'- aCCGCGUGGuCGCgguacacagcgGCUcggGCUGGGUc -3'
miRNA:   3'- -GGCGCGCC-GCGaa---------CGAcaaCGGCCCA- -5'
24516 5' -60.9 NC_005264.1 + 49248 0.67 0.658952
Target:  5'- gUGCGCGGCaguuggcgagugacaGCUa-CUGUUGCCGGa- -3'
miRNA:   3'- gGCGCGCCG---------------CGAacGACAACGGCCca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.