Results 21 - 40 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24516 | 5' | -60.9 | NC_005264.1 | + | 123637 | 0.67 | 0.645167 |
Target: 5'- gCCGCgGCGGCGUagGCgcGUUcucgaaaaucGCCGGGc -3' miRNA: 3'- -GGCG-CGCCGCGaaCGa-CAA----------CGGCCCa -5' |
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24516 | 5' | -60.9 | NC_005264.1 | + | 4610 | 0.67 | 0.645167 |
Target: 5'- gCCGCgGCGGCGUagGCgcGUUcucgaaaaucGCCGGGc -3' miRNA: 3'- -GGCG-CGCCGCGaaCGa-CAA----------CGGCCCa -5' |
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24516 | 5' | -60.9 | NC_005264.1 | + | 98434 | 0.67 | 0.635308 |
Target: 5'- gCC-CGCGGCGUcgGCcuugGCCGGGc -3' miRNA: 3'- -GGcGCGCCGCGaaCGacaaCGGCCCa -5' |
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24516 | 5' | -60.9 | NC_005264.1 | + | 131714 | 0.67 | 0.625447 |
Target: 5'- cCUGCGCGGCGU-UGCUGgcGCuCuGGc -3' miRNA: 3'- -GGCGCGCCGCGaACGACaaCG-GcCCa -5' |
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24516 | 5' | -60.9 | NC_005264.1 | + | 62923 | 0.68 | 0.595918 |
Target: 5'- gCCGCGCGG-GCUUGCgcg-GCCGc-- -3' miRNA: 3'- -GGCGCGCCgCGAACGacaaCGGCcca -5' |
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24516 | 5' | -60.9 | NC_005264.1 | + | 98677 | 0.68 | 0.586116 |
Target: 5'- gCUG-GCGGCGCUUGCacaccgGCCGGa- -3' miRNA: 3'- -GGCgCGCCGCGAACGacaa--CGGCCca -5' |
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24516 | 5' | -60.9 | NC_005264.1 | + | 91319 | 0.68 | 0.586116 |
Target: 5'- cCCGUaccggaGGCGCUgcgguugGCUGUgaagGCUGGGUc -3' miRNA: 3'- -GGCGcg----CCGCGAa------CGACAa---CGGCCCA- -5' |
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24516 | 5' | -60.9 | NC_005264.1 | + | 52943 | 0.68 | 0.576345 |
Target: 5'- gCCGCgcccGCGGCGCaUUGCgcc-GCgGGGUa -3' miRNA: 3'- -GGCG----CGCCGCG-AACGacaaCGgCCCA- -5' |
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24516 | 5' | -60.9 | NC_005264.1 | + | 85433 | 0.68 | 0.576345 |
Target: 5'- aCCGCGCGgacagggaGCGCUUGCcGgcGuCUGGGc -3' miRNA: 3'- -GGCGCGC--------CGCGAACGaCaaC-GGCCCa -5' |
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24516 | 5' | -60.9 | NC_005264.1 | + | 101338 | 0.68 | 0.576345 |
Target: 5'- aCGCGCGGCGCUaGCcGagaccGCgGGGc -3' miRNA: 3'- gGCGCGCCGCGAaCGaCaa---CGgCCCa -5' |
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24516 | 5' | -60.9 | NC_005264.1 | + | 58508 | 0.68 | 0.566611 |
Target: 5'- -aGCGCGGUGCguccucgGaUGCCGGGUu -3' miRNA: 3'- ggCGCGCCGCGaacga--CaACGGCCCA- -5' |
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24516 | 5' | -60.9 | NC_005264.1 | + | 22717 | 0.68 | 0.562729 |
Target: 5'- -aGUGCGGCGCgcaagcgugugucUGCUGcccggUGCUGGGc -3' miRNA: 3'- ggCGCGCCGCGa------------ACGACa----ACGGCCCa -5' |
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24516 | 5' | -60.9 | NC_005264.1 | + | 43675 | 0.69 | 0.556919 |
Target: 5'- gCGCGcCGGCGUUaagGCgGccGCCGGGg -3' miRNA: 3'- gGCGC-GCCGCGAa--CGaCaaCGGCCCa -5' |
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24516 | 5' | -60.9 | NC_005264.1 | + | 162701 | 0.69 | 0.556919 |
Target: 5'- gCGCGcCGGCGUUaagGCgGccGCCGGGg -3' miRNA: 3'- gGCGC-GCCGCGAa--CGaCaaCGGCCCa -5' |
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24516 | 5' | -60.9 | NC_005264.1 | + | 100029 | 0.69 | 0.518686 |
Target: 5'- gCCGCgGCGGCGC-UGCUGcguCCGGuGg -3' miRNA: 3'- -GGCG-CGCCGCGaACGACaacGGCC-Ca -5' |
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24516 | 5' | -60.9 | NC_005264.1 | + | 155958 | 0.69 | 0.518686 |
Target: 5'- aCUGCGCGGCucgcggacGCUcugGCUGccGUCGGGa -3' miRNA: 3'- -GGCGCGCCG--------CGAa--CGACaaCGGCCCa -5' |
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24516 | 5' | -60.9 | NC_005264.1 | + | 46463 | 0.69 | 0.509286 |
Target: 5'- uUGCGCGGCGCUcuuUGCcUGUggaGUcgCGGGUu -3' miRNA: 3'- gGCGCGCCGCGA---ACG-ACAa--CG--GCCCA- -5' |
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24516 | 5' | -60.9 | NC_005264.1 | + | 149412 | 0.7 | 0.490707 |
Target: 5'- cUCGCGCGuaGaCUgggccuuugGCUGUUGCuCGGGUu -3' miRNA: 3'- -GGCGCGCcgC-GAa--------CGACAACG-GCCCA- -5' |
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24516 | 5' | -60.9 | NC_005264.1 | + | 16766 | 0.7 | 0.45454 |
Target: 5'- cCCGCGCgGGgGCgcGCUGUucggGCCGGa- -3' miRNA: 3'- -GGCGCG-CCgCGaaCGACAa---CGGCCca -5' |
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24516 | 5' | -60.9 | NC_005264.1 | + | 96074 | 0.7 | 0.451885 |
Target: 5'- uUCGCGCGGCcuguauccguugcgGCUa-CUGUUGCCGcGGUu -3' miRNA: 3'- -GGCGCGCCG--------------CGAacGACAACGGC-CCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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