miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24516 5' -60.9 NC_005264.1 + 4610 0.67 0.645167
Target:  5'- gCCGCgGCGGCGUagGCgcGUUcucgaaaaucGCCGGGc -3'
miRNA:   3'- -GGCG-CGCCGCGaaCGa-CAA----------CGGCCCa -5'
24516 5' -60.9 NC_005264.1 + 6824 0.78 0.15038
Target:  5'- aCCGCGCaagcgucgccgGGCGUaccUUGCUgGUUGCCGGGa -3'
miRNA:   3'- -GGCGCG-----------CCGCG---AACGA-CAACGGCCCa -5'
24516 5' -60.9 NC_005264.1 + 8382 0.66 0.688333
Target:  5'- gCCGgaCGCGGCGCgUugaagcugccggagcUGUUGUUGUCGaGGUu -3'
miRNA:   3'- -GGC--GCGCCGCG-A---------------ACGACAACGGC-CCA- -5'
24516 5' -60.9 NC_005264.1 + 12141 0.75 0.23754
Target:  5'- uCCGC-CGGCGC-UGCccGUUGCUGGGg -3'
miRNA:   3'- -GGCGcGCCGCGaACGa-CAACGGCCCa -5'
24516 5' -60.9 NC_005264.1 + 13450 0.66 0.732549
Target:  5'- aCGCgGCGGCGCcgaagggGCUccUGCgGGGa -3'
miRNA:   3'- gGCG-CGCCGCGaa-----CGAcaACGgCCCa -5'
24516 5' -60.9 NC_005264.1 + 16077 1.08 0.001379
Target:  5'- gCCGCGCGGCGCUUGCUGUUGCCGGGUc -3'
miRNA:   3'- -GGCGCGCCGCGAACGACAACGGCCCA- -5'
24516 5' -60.9 NC_005264.1 + 16766 0.7 0.45454
Target:  5'- cCCGCGCgGGgGCgcGCUGUucggGCCGGa- -3'
miRNA:   3'- -GGCGCG-CCgCGaaCGACAa---CGGCCca -5'
24516 5' -60.9 NC_005264.1 + 18076 0.66 0.723054
Target:  5'- gCGCGCGG-GCauuuaauucUGCUGUuaUGCCGGc- -3'
miRNA:   3'- gGCGCGCCgCGa--------ACGACA--ACGGCCca -5'
24516 5' -60.9 NC_005264.1 + 22717 0.68 0.562729
Target:  5'- -aGUGCGGCGCgcaagcgugugucUGCUGcccggUGCUGGGc -3'
miRNA:   3'- ggCGCGCCGCGa------------ACGACa----ACGGCCCa -5'
24516 5' -60.9 NC_005264.1 + 40784 0.66 0.694168
Target:  5'- aCGCaGCGGCGC-UGCaaacUGCgGGGg -3'
miRNA:   3'- gGCG-CGCCGCGaACGaca-ACGgCCCa -5'
24516 5' -60.9 NC_005264.1 + 42073 0.75 0.243137
Target:  5'- gCGCGUGGCGUcaGCUGc-GCCGGGa -3'
miRNA:   3'- gGCGCGCCGCGaaCGACaaCGGCCCa -5'
24516 5' -60.9 NC_005264.1 + 43675 0.69 0.556919
Target:  5'- gCGCGcCGGCGUUaagGCgGccGCCGGGg -3'
miRNA:   3'- gGCGC-GCCGCGAa--CGaCaaCGGCCCa -5'
24516 5' -60.9 NC_005264.1 + 46463 0.69 0.509286
Target:  5'- uUGCGCGGCGCUcuuUGCcUGUggaGUcgCGGGUu -3'
miRNA:   3'- gGCGCGCCGCGA---ACG-ACAa--CG--GCCCA- -5'
24516 5' -60.9 NC_005264.1 + 49248 0.67 0.658952
Target:  5'- gUGCGCGGCaguuggcgagugacaGCUa-CUGUUGCCGGa- -3'
miRNA:   3'- gGCGCGCCG---------------CGAacGACAACGGCCca -5'
24516 5' -60.9 NC_005264.1 + 52943 0.68 0.576345
Target:  5'- gCCGCgcccGCGGCGCaUUGCgcc-GCgGGGUa -3'
miRNA:   3'- -GGCG----CGCCGCG-AACGacaaCGgCCCA- -5'
24516 5' -60.9 NC_005264.1 + 58508 0.68 0.566611
Target:  5'- -aGCGCGGUGCguccucgGaUGCCGGGUu -3'
miRNA:   3'- ggCGCGCCGCGaacga--CaACGGCCCA- -5'
24516 5' -60.9 NC_005264.1 + 62923 0.68 0.595918
Target:  5'- gCCGCGCGG-GCUUGCgcg-GCCGc-- -3'
miRNA:   3'- -GGCGCGCCgCGAACGacaaCGGCcca -5'
24516 5' -60.9 NC_005264.1 + 72698 0.66 0.694168
Target:  5'- gUGaCGCGGCGCaaUGCU-UUGCCuGGGa -3'
miRNA:   3'- gGC-GCGCCGCGa-ACGAcAACGG-CCCa -5'
24516 5' -60.9 NC_005264.1 + 74106 0.66 0.723054
Target:  5'- -gGCGCGGuCGac-GCUGUcgcgGCUGGGg -3'
miRNA:   3'- ggCGCGCC-GCgaaCGACAa---CGGCCCa -5'
24516 5' -60.9 NC_005264.1 + 75077 0.67 0.664849
Target:  5'- gCCGCugguucuucGCGGCGCUgcgGCaGgcGCCGGc- -3'
miRNA:   3'- -GGCG---------CGCCGCGAa--CGaCaaCGGCCca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.