Results 1 - 20 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24516 | 5' | -60.9 | NC_005264.1 | + | 89803 | 0.66 | 0.723054 |
Target: 5'- aCCGC-CGGCGCUUuccgcGCUaGUgaccGCCGuGGg -3' miRNA: 3'- -GGCGcGCCGCGAA-----CGA-CAa---CGGC-CCa -5' |
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24516 | 5' | -60.9 | NC_005264.1 | + | 123637 | 0.67 | 0.645167 |
Target: 5'- gCCGCgGCGGCGUagGCgcGUUcucgaaaaucGCCGGGc -3' miRNA: 3'- -GGCG-CGCCGCGaaCGa-CAA----------CGGCCCa -5' |
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24516 | 5' | -60.9 | NC_005264.1 | + | 77456 | 0.67 | 0.662884 |
Target: 5'- aCCGCGUGGuCGCgguacacagcgGCUcggGCUGGGUc -3' miRNA: 3'- -GGCGCGCC-GCGaa---------CGAcaaCGGCCCA- -5' |
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24516 | 5' | -60.9 | NC_005264.1 | + | 75077 | 0.67 | 0.664849 |
Target: 5'- gCCGCugguucuucGCGGCGCUgcgGCaGgcGCCGGc- -3' miRNA: 3'- -GGCG---------CGCCGCGAa--CGaCaaCGGCCca -5' |
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24516 | 5' | -60.9 | NC_005264.1 | + | 127409 | 0.66 | 0.688333 |
Target: 5'- gCCGgaCGCGGCGCgUugaagcugccggagcUGUUGUUGUCGaGGUu -3' miRNA: 3'- -GGC--GCGCCGCG-A---------------ACGACAACGGC-CCA- -5' |
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24516 | 5' | -60.9 | NC_005264.1 | + | 72698 | 0.66 | 0.694168 |
Target: 5'- gUGaCGCGGCGCaaUGCU-UUGCCuGGGa -3' miRNA: 3'- gGC-GCGCCGCGa-ACGAcAACGG-CCCa -5' |
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24516 | 5' | -60.9 | NC_005264.1 | + | 159810 | 0.66 | 0.694168 |
Target: 5'- aCGCaGCGGCGC-UGCaaacUGCgGGGg -3' miRNA: 3'- gGCG-CGCCGCGaACGaca-ACGgCCCa -5' |
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24516 | 5' | -60.9 | NC_005264.1 | + | 135573 | 0.66 | 0.713487 |
Target: 5'- gCCGCGCGuCGCUcGCgacuacggGUggGUCGGGa -3' miRNA: 3'- -GGCGCGCcGCGAaCGa-------CAa-CGGCCCa -5' |
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24516 | 5' | -60.9 | NC_005264.1 | + | 18076 | 0.66 | 0.723054 |
Target: 5'- gCGCGCGG-GCauuuaauucUGCUGUuaUGCCGGc- -3' miRNA: 3'- gGCGCGCCgCGa--------ACGACA--ACGGCCca -5' |
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24516 | 5' | -60.9 | NC_005264.1 | + | 62923 | 0.68 | 0.595918 |
Target: 5'- gCCGCGCGG-GCUUGCgcg-GCCGc-- -3' miRNA: 3'- -GGCGCGCCgCGAACGacaaCGGCcca -5' |
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24516 | 5' | -60.9 | NC_005264.1 | + | 91319 | 0.68 | 0.586116 |
Target: 5'- cCCGUaccggaGGCGCUgcgguugGCUGUgaagGCUGGGUc -3' miRNA: 3'- -GGCGcg----CCGCGAa------CGACAa---CGGCCCA- -5' |
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24516 | 5' | -60.9 | NC_005264.1 | + | 52943 | 0.68 | 0.576345 |
Target: 5'- gCCGCgcccGCGGCGCaUUGCgcc-GCgGGGUa -3' miRNA: 3'- -GGCG----CGCCGCG-AACGacaaCGgCCCA- -5' |
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24516 | 5' | -60.9 | NC_005264.1 | + | 12141 | 0.75 | 0.23754 |
Target: 5'- uCCGC-CGGCGC-UGCccGUUGCUGGGg -3' miRNA: 3'- -GGCGcGCCGCGaACGa-CAACGGCCCa -5' |
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24516 | 5' | -60.9 | NC_005264.1 | + | 42073 | 0.75 | 0.243137 |
Target: 5'- gCGCGUGGCGUcaGCUGc-GCCGGGa -3' miRNA: 3'- gGCGCGCCGCGaaCGACaaCGGCCCa -5' |
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24516 | 5' | -60.9 | NC_005264.1 | + | 93477 | 0.73 | 0.347294 |
Target: 5'- aCCGCGCugucugaGGCGC-UGCUGgcgGCCGGc- -3' miRNA: 3'- -GGCGCG-------CCGCGaACGACaa-CGGCCca -5' |
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24516 | 5' | -60.9 | NC_005264.1 | + | 96074 | 0.7 | 0.451885 |
Target: 5'- uUCGCGCGGCcuguauccguugcgGCUa-CUGUUGCCGcGGUu -3' miRNA: 3'- -GGCGCGCCG--------------CGAacGACAACGGC-CCA- -5' |
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24516 | 5' | -60.9 | NC_005264.1 | + | 16766 | 0.7 | 0.45454 |
Target: 5'- cCCGCGCgGGgGCgcGCUGUucggGCCGGa- -3' miRNA: 3'- -GGCGCG-CCgCGaaCGACAa---CGGCCca -5' |
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24516 | 5' | -60.9 | NC_005264.1 | + | 46463 | 0.69 | 0.509286 |
Target: 5'- uUGCGCGGCGCUcuuUGCcUGUggaGUcgCGGGUu -3' miRNA: 3'- gGCGCGCCGCGA---ACG-ACAa--CG--GCCCA- -5' |
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24516 | 5' | -60.9 | NC_005264.1 | + | 162701 | 0.69 | 0.556919 |
Target: 5'- gCGCGcCGGCGUUaagGCgGccGCCGGGg -3' miRNA: 3'- gGCGC-GCCGCGAa--CGaCaaCGGCCCa -5' |
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24516 | 5' | -60.9 | NC_005264.1 | + | 22717 | 0.68 | 0.562729 |
Target: 5'- -aGUGCGGCGCgcaagcgugugucUGCUGcccggUGCUGGGc -3' miRNA: 3'- ggCGCGCCGCGa------------ACGACa----ACGGCCCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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