Results 1 - 20 of 20 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24517 | 3' | -48.3 | NC_005264.1 | + | 147010 | 0.66 | 0.999633 |
Target: 5'- uGGGcGGAGAUUUcuuccagCGUAUUGUUCaUUGCu -3' miRNA: 3'- gCCC-UUUCUAAG-------GCAUAGCGAG-AACG- -5' |
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24517 | 3' | -48.3 | NC_005264.1 | + | 148239 | 0.66 | 0.999777 |
Target: 5'- aCGGGAGAGAUcuUCUGcg-CGUUCUc-- -3' miRNA: 3'- -GCCCUUUCUA--AGGCauaGCGAGAacg -5' |
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24517 | 3' | -48.3 | NC_005264.1 | + | 148284 | 0.66 | 0.99955 |
Target: 5'- cCGGcGGGAGAUUCUGgagaccgCGCgcgUGCg -3' miRNA: 3'- -GCC-CUUUCUAAGGCaua----GCGagaACG- -5' |
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24517 | 3' | -48.3 | NC_005264.1 | + | 33474 | 0.67 | 0.998953 |
Target: 5'- aGGGGGAGcauuuuccucGUUCCGcgcUUGCUCagUGCg -3' miRNA: 3'- gCCCUUUC----------UAAGGCau-AGCGAGa-ACG- -5' |
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24517 | 3' | -48.3 | NC_005264.1 | + | 96998 | 0.67 | 0.998953 |
Target: 5'- uGGGAAGGG---CGUAUCGUuaUCUcGCg -3' miRNA: 3'- gCCCUUUCUaagGCAUAGCG--AGAaCG- -5' |
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24517 | 3' | -48.3 | NC_005264.1 | + | 152766 | 0.67 | 0.999144 |
Target: 5'- cCGGcGGGAGAUUCCGc--CGCggcUGCa -3' miRNA: 3'- -GCC-CUUUCUAAGGCauaGCGagaACG- -5' |
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24517 | 3' | -48.3 | NC_005264.1 | + | 7429 | 0.67 | 0.999144 |
Target: 5'- gGGGAGGGAUUC-GUAUUcCUCUUcGUc -3' miRNA: 3'- gCCCUUUCUAAGgCAUAGcGAGAA-CG- -5' |
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24517 | 3' | -48.3 | NC_005264.1 | + | 126456 | 0.67 | 0.999144 |
Target: 5'- gGGGAGGGAUUC-GUAUUcCUCUUcGUc -3' miRNA: 3'- gCCCUUUCUAAGgCAUAGcGAGAA-CG- -5' |
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24517 | 3' | -48.3 | NC_005264.1 | + | 152501 | 0.67 | 0.998953 |
Target: 5'- aGGGGGAGcauuuuccucGUUCCGcgcUUGCUCagUGCg -3' miRNA: 3'- gCCCUUUC----------UAAGGCau-AGCGAGa-ACG- -5' |
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24517 | 3' | -48.3 | NC_005264.1 | + | 36044 | 0.67 | 0.998726 |
Target: 5'- gCGGGAAAaGUUCCuGUAcUUGCUCagcaacgUGCu -3' miRNA: 3'- -GCCCUUUcUAAGG-CAU-AGCGAGa------ACG- -5' |
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24517 | 3' | -48.3 | NC_005264.1 | + | 44301 | 0.68 | 0.997355 |
Target: 5'- gCGGGAGAGAag-CGUggUGCgaagCUUGCu -3' miRNA: 3'- -GCCCUUUCUaagGCAuaGCGa---GAACG- -5' |
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24517 | 3' | -48.3 | NC_005264.1 | + | 149701 | 0.68 | 0.997779 |
Target: 5'- uCGGG-AAGAgaCCGUAUCcccuagaaGCgCUUGCu -3' miRNA: 3'- -GCCCuUUCUaaGGCAUAG--------CGaGAACG- -5' |
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24517 | 3' | -48.3 | NC_005264.1 | + | 27837 | 0.69 | 0.995593 |
Target: 5'- aGGGgcAGAcUCCGUcuccagcGUCGaagCUUGCg -3' miRNA: 3'- gCCCuuUCUaAGGCA-------UAGCga-GAACG- -5' |
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24517 | 3' | -48.3 | NC_005264.1 | + | 34473 | 0.69 | 0.994104 |
Target: 5'- uCGGGAA--AUUCCcugAUCGCUCUgGUa -3' miRNA: 3'- -GCCCUUucUAAGGca-UAGCGAGAaCG- -5' |
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24517 | 3' | -48.3 | NC_005264.1 | + | 153500 | 0.69 | 0.994104 |
Target: 5'- uCGGGAA--AUUCCcugAUCGCUCUgGUa -3' miRNA: 3'- -GCCCUUucUAAGGca-UAGCGAGAaCG- -5' |
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24517 | 3' | -48.3 | NC_005264.1 | + | 50266 | 0.69 | 0.992125 |
Target: 5'- gCGGcGgcGAUUCCGaGUUGCUCgUGCg -3' miRNA: 3'- -GCCcUuuCUAAGGCaUAGCGAGaACG- -5' |
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24517 | 3' | -48.3 | NC_005264.1 | + | 57167 | 0.7 | 0.988207 |
Target: 5'- cCGGcGGGAGAcgCCGUGUUGUUCUg-- -3' miRNA: 3'- -GCC-CUUUCUaaGGCAUAGCGAGAacg -5' |
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24517 | 3' | -48.3 | NC_005264.1 | + | 81942 | 0.71 | 0.978518 |
Target: 5'- aGGGggGcgcuuGAUgaggUCGUGUCGCUCagGCu -3' miRNA: 3'- gCCCuuU-----CUAa---GGCAUAGCGAGaaCG- -5' |
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24517 | 3' | -48.3 | NC_005264.1 | + | 1019 | 0.71 | 0.982923 |
Target: 5'- uGGGggGGcaggggccGUUCUGUAuucUCGCgguUCUUGCu -3' miRNA: 3'- gCCCuuUC--------UAAGGCAU---AGCG---AGAACG- -5' |
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24517 | 3' | -48.3 | NC_005264.1 | + | 15307 | 1.13 | 0.011519 |
Target: 5'- gCGGGAAAGAUUCCGUAUCGCUCUUGCc -3' miRNA: 3'- -GCCCUUUCUAAGGCAUAGCGAGAACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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