miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24517 5' -56.2 NC_005264.1 + 6436 0.67 0.888058
Target:  5'- uCGCGGcgGCGUcgcugGCGGAGaacuCCUCgGCg -3'
miRNA:   3'- uGUGCCuaCGCA-----CGCCUU----GGAGaCGg -5'
24517 5' -56.2 NC_005264.1 + 116423 0.67 0.888058
Target:  5'- cGCAgGGcgGCGUGC--AGCCUCgcgGCg -3'
miRNA:   3'- -UGUgCCuaCGCACGccUUGGAGa--CGg -5'
24517 5' -56.2 NC_005264.1 + 43007 0.67 0.881182
Target:  5'- aGCACGGcUGCGUGUGGucguACgUUU-CCg -3'
miRNA:   3'- -UGUGCCuACGCACGCCu---UGgAGAcGG- -5'
24517 5' -56.2 NC_005264.1 + 159867 0.67 0.866779
Target:  5'- cGCAUGGAUuCGUGguCGGAACUa-UGCCg -3'
miRNA:   3'- -UGUGCCUAcGCAC--GCCUUGGagACGG- -5'
24517 5' -56.2 NC_005264.1 + 72594 0.67 0.859264
Target:  5'- gGCGCGcGAUGaaGUGCucGAACCUUUGCa -3'
miRNA:   3'- -UGUGC-CUACg-CACGc-CUUGGAGACGg -5'
24517 5' -56.2 NC_005264.1 + 148254 0.67 0.851547
Target:  5'- uCGCGGcgGCGUuucaCGGGACagaUUUGCCc -3'
miRNA:   3'- uGUGCCuaCGCAc---GCCUUGg--AGACGG- -5'
24517 5' -56.2 NC_005264.1 + 43777 0.68 0.843634
Target:  5'- uUACGGAgacucgccgUGgGUGCGGGGCgcaguUUCUGUCg -3'
miRNA:   3'- uGUGCCU---------ACgCACGCCUUG-----GAGACGG- -5'
24517 5' -56.2 NC_005264.1 + 162803 0.68 0.843634
Target:  5'- uUACGGAgacucgccgUGgGUGCGGGGCgcaguUUCUGUCg -3'
miRNA:   3'- uGUGCCU---------ACgCACGCCUUG-----GAGACGG- -5'
24517 5' -56.2 NC_005264.1 + 1046 0.68 0.843634
Target:  5'- uCGCGGuucuUGCuccaccGUGCGGAGgCUC-GCCg -3'
miRNA:   3'- uGUGCCu---ACG------CACGCCUUgGAGaCGG- -5'
24517 5' -56.2 NC_005264.1 + 54601 0.68 0.835531
Target:  5'- aACGcCGGccucggcGCGUGCGGGACaUCgGCCa -3'
miRNA:   3'- -UGU-GCCua-----CGCACGCCUUGgAGaCGG- -5'
24517 5' -56.2 NC_005264.1 + 23562 0.68 0.835531
Target:  5'- cCGCGGAUGggagcuaGUGCGGAuCUUCUuGCa -3'
miRNA:   3'- uGUGCCUACg------CACGCCUuGGAGA-CGg -5'
24517 5' -56.2 NC_005264.1 + 150793 0.68 0.827247
Target:  5'- uUAUGGggGCGUGUGGGgcaggagcgcaGCgaCUGCCc -3'
miRNA:   3'- uGUGCCuaCGCACGCCU-----------UGgaGACGG- -5'
24517 5' -56.2 NC_005264.1 + 157800 0.68 0.818788
Target:  5'- ---aGGcgGCGcccacgacGCGGAACCUCgugGCCu -3'
miRNA:   3'- ugugCCuaCGCa-------CGCCUUGGAGa--CGG- -5'
24517 5' -56.2 NC_005264.1 + 124479 0.68 0.810162
Target:  5'- -uGCGGAaGCGgcgagaaaaaGCGGcAGCCUCcGCCa -3'
miRNA:   3'- ugUGCCUaCGCa---------CGCC-UUGGAGaCGG- -5'
24517 5' -56.2 NC_005264.1 + 146821 0.68 0.810162
Target:  5'- uGCACGGAgGCGcgGCGGucgUCgcCUGCCa -3'
miRNA:   3'- -UGUGCCUaCGCa-CGCCuu-GGa-GACGG- -5'
24517 5' -56.2 NC_005264.1 + 68448 0.68 0.810162
Target:  5'- cCGCGGucUGCGcGCGGAggGCCUCcacuaauauugGCCa -3'
miRNA:   3'- uGUGCCu-ACGCaCGCCU--UGGAGa----------CGG- -5'
24517 5' -56.2 NC_005264.1 + 29322 0.69 0.801377
Target:  5'- uGCAUGGAcacaGCGccuccUGCGGcuacGACgUCUGCCg -3'
miRNA:   3'- -UGUGCCUa---CGC-----ACGCC----UUGgAGACGG- -5'
24517 5' -56.2 NC_005264.1 + 807 0.69 0.801377
Target:  5'- gUACGGcUGgGUGCGcGGccggcuuuaGCCUCUGUCu -3'
miRNA:   3'- uGUGCCuACgCACGC-CU---------UGGAGACGG- -5'
24517 5' -56.2 NC_005264.1 + 100371 0.69 0.792442
Target:  5'- aACAUGGGgcaaUGC-UGCGGAugCcgCUGCUg -3'
miRNA:   3'- -UGUGCCU----ACGcACGCCUugGa-GACGG- -5'
24517 5' -56.2 NC_005264.1 + 49117 0.69 0.774152
Target:  5'- uAUACGGuuUGCucguauucGUGCGaGGcGCCUCUGCCc -3'
miRNA:   3'- -UGUGCCu-ACG--------CACGC-CU-UGGAGACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.