miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24518 3' -55.1 NC_005264.1 + 21385 0.66 0.944602
Target:  5'- gAGGCcccgccgCUCGCCUCgauggagagGGUGGCc- -3'
miRNA:   3'- gUCCGauaaa--GAGCGGAG---------CCACCGcu -5'
24518 3' -55.1 NC_005264.1 + 76956 0.66 0.944602
Target:  5'- gAGGCc-UUUCacgGCCUCGGUGGUc- -3'
miRNA:   3'- gUCCGauAAAGag-CGGAGCCACCGcu -5'
24518 3' -55.1 NC_005264.1 + 81004 0.66 0.944602
Target:  5'- -uGGCc---UC-CGCCUUGGUGGuCGAa -3'
miRNA:   3'- guCCGauaaAGaGCGGAGCCACC-GCU- -5'
24518 3' -55.1 NC_005264.1 + 27939 0.66 0.940002
Target:  5'- -uGGCg--UUCUgCGCgUCGGUGGUc- -3'
miRNA:   3'- guCCGauaAAGA-GCGgAGCCACCGcu -5'
24518 3' -55.1 NC_005264.1 + 61000 0.66 0.935163
Target:  5'- -cGGcCUcgUUCUCuGCCUCGGcuucggccaGGCGGu -3'
miRNA:   3'- guCC-GAuaAAGAG-CGGAGCCa--------CCGCU- -5'
24518 3' -55.1 NC_005264.1 + 37072 0.66 0.930083
Target:  5'- gCAGGCUGUUUCUaGCgacgCGGcGGCa- -3'
miRNA:   3'- -GUCCGAUAAAGAgCGga--GCCaCCGcu -5'
24518 3' -55.1 NC_005264.1 + 122701 0.66 0.924762
Target:  5'- uGGGCgg---C-CGUCUCGGcGGCGAg -3'
miRNA:   3'- gUCCGauaaaGaGCGGAGCCaCCGCU- -5'
24518 3' -55.1 NC_005264.1 + 3674 0.66 0.924762
Target:  5'- uGGGCgg---C-CGUCUCGGcGGCGAg -3'
miRNA:   3'- gUCCGauaaaGaGCGGAGCCaCCGCU- -5'
24518 3' -55.1 NC_005264.1 + 157038 0.67 0.915746
Target:  5'- -cGGaCUAUUgaacgccgugggCGCCUCGGUGGUGc -3'
miRNA:   3'- guCC-GAUAAaga---------GCGGAGCCACCGCu -5'
24518 3' -55.1 NC_005264.1 + 38011 0.67 0.915746
Target:  5'- -cGGaCUAUUgaacgccgugggCGCCUCGGUGGUGc -3'
miRNA:   3'- guCC-GAUAAaga---------GCGGAGCCACCGCu -5'
24518 3' -55.1 NC_005264.1 + 116435 0.68 0.858591
Target:  5'- gGGGCg---UCUgGCCgCGGgGGCGAc -3'
miRNA:   3'- gUCCGauaaAGAgCGGaGCCaCCGCU- -5'
24518 3' -55.1 NC_005264.1 + 136562 0.69 0.83449
Target:  5'- -cGGCg---UCUU-CCUCGGUGGCGu -3'
miRNA:   3'- guCCGauaaAGAGcGGAGCCACCGCu -5'
24518 3' -55.1 NC_005264.1 + 94936 0.69 0.817482
Target:  5'- -cGGCcGUUaUCUaCGCgUCGGUGGUGGg -3'
miRNA:   3'- guCCGaUAA-AGA-GCGgAGCCACCGCU- -5'
24518 3' -55.1 NC_005264.1 + 91217 0.69 0.808718
Target:  5'- uGGGCUAUcUCUgccgcCGCCUCGccGGUGAg -3'
miRNA:   3'- gUCCGAUAaAGA-----GCGGAGCcaCCGCU- -5'
24518 3' -55.1 NC_005264.1 + 156255 0.72 0.635187
Target:  5'- gGGGCcuccaugcaaaccgUCaUCGCCUCGGUGGUGGu -3'
miRNA:   3'- gUCCGauaa----------AG-AGCGGAGCCACCGCU- -5'
24518 3' -55.1 NC_005264.1 + 82341 0.73 0.601281
Target:  5'- -cGGCgaugUUCUCGCuCUCGGccuUGGCGGc -3'
miRNA:   3'- guCCGaua-AAGAGCG-GAGCC---ACCGCU- -5'
24518 3' -55.1 NC_005264.1 + 14170 1.09 0.003827
Target:  5'- cCAGGCUAUUUCUCGCCUCGGUGGCGAu -3'
miRNA:   3'- -GUCCGAUAAAGAGCGGAGCCACCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.