miRNA display CGI


Results 1 - 20 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24518 5' -54.5 NC_005264.1 + 101889 0.66 0.945895
Target:  5'- aCCaCA-CGaaCACGGCGGAGAACAcuACa -3'
miRNA:   3'- gGG-GUaGCcgGUGCCGCCUUUUGU--UG- -5'
24518 5' -54.5 NC_005264.1 + 151880 0.66 0.964651
Target:  5'- cCCCCgugcuucgucaucGUCGGucCCGCGGUGGuuGGCu-- -3'
miRNA:   3'- -GGGG-------------UAGCC--GGUGCCGCCuuUUGuug -5'
24518 5' -54.5 NC_005264.1 + 89950 0.66 0.950166
Target:  5'- gCCCAUcggCGGCCGCuGGCGcGuAGAACu-- -3'
miRNA:   3'- gGGGUA---GCCGGUG-CCGC-C-UUUUGuug -5'
24518 5' -54.5 NC_005264.1 + 124301 0.66 0.945895
Target:  5'- -gUCG-CGGCCggACGGCGGG--GCGGCg -3'
miRNA:   3'- ggGGUaGCCGG--UGCCGCCUuuUGUUG- -5'
24518 5' -54.5 NC_005264.1 + 128889 0.66 0.945895
Target:  5'- cCCCUAUCGGgCGCGGUcccGGcgcgccACGGCc -3'
miRNA:   3'- -GGGGUAGCCgGUGCCG---CCuuu---UGUUG- -5'
24518 5' -54.5 NC_005264.1 + 106099 0.66 0.945895
Target:  5'- -gCCAaucUCGGCCuCcGCGGAAAggcACGACa -3'
miRNA:   3'- ggGGU---AGCCGGuGcCGCCUUU---UGUUG- -5'
24518 5' -54.5 NC_005264.1 + 64339 0.66 0.945895
Target:  5'- cCCCCGUCGGCgCcucCGGCaGAuacuuUAGCa -3'
miRNA:   3'- -GGGGUAGCCG-Gu--GCCGcCUuuu--GUUG- -5'
24518 5' -54.5 NC_005264.1 + 117237 0.66 0.945895
Target:  5'- uCCCCucgcccCGGCgAU-GCGGAGAACGAg -3'
miRNA:   3'- -GGGGua----GCCGgUGcCGCCUUUUGUUg -5'
24518 5' -54.5 NC_005264.1 + 146728 0.66 0.961608
Target:  5'- gCCCCAagcuuagGGUCgaacgaggGCGGCGGAcccGGCAACa -3'
miRNA:   3'- -GGGGUag-----CCGG--------UGCCGCCUu--UUGUUG- -5'
24518 5' -54.5 NC_005264.1 + 25204 0.66 0.961608
Target:  5'- gCCCUguGUCuGUCgaGCGG-GGAGAGCGACa -3'
miRNA:   3'- -GGGG--UAGcCGG--UGCCgCCUUUUGUUG- -5'
24518 5' -54.5 NC_005264.1 + 25554 0.66 0.964978
Target:  5'- gCCCgCGUCGccGCCaACGccGCGGAAucGCAACc -3'
miRNA:   3'- -GGG-GUAGC--CGG-UGC--CGCCUUu-UGUUG- -5'
24518 5' -54.5 NC_005264.1 + 125459 0.66 0.945895
Target:  5'- aCUCUcgCGGCgGCgucgcuGGCGGAGAACu-- -3'
miRNA:   3'- -GGGGuaGCCGgUG------CCGCCUUUUGuug -5'
24518 5' -54.5 NC_005264.1 + 122707 0.66 0.958018
Target:  5'- -gCCGucUCGGCgGCGaGacgaGGAGGACGGCg -3'
miRNA:   3'- ggGGU--AGCCGgUGC-Cg---CCUUUUGUUG- -5'
24518 5' -54.5 NC_005264.1 + 41222 0.66 0.950166
Target:  5'- cCCCCAaaUGGCgAUGaGUGGAAAGCGc- -3'
miRNA:   3'- -GGGGUa-GCCGgUGC-CGCCUUUUGUug -5'
24518 5' -54.5 NC_005264.1 + 95482 0.66 0.961608
Target:  5'- aCUCGUCuuGGCUACGgaGCGGAGAGUAAUa -3'
miRNA:   3'- gGGGUAG--CCGGUGC--CGCCUUUUGUUG- -5'
24518 5' -54.5 NC_005264.1 + 72072 0.66 0.945895
Target:  5'- uCCCUGUCaugcacaGCCACGGCGGcauAGGCcuguACa -3'
miRNA:   3'- -GGGGUAGc------CGGUGCCGCCu--UUUGu---UG- -5'
24518 5' -54.5 NC_005264.1 + 54185 0.66 0.947631
Target:  5'- aCCUCGccUCGGCgguaagguacgauugCGCGGgGGAuacGGACGGCg -3'
miRNA:   3'- -GGGGU--AGCCG---------------GUGCCgCCU---UUUGUUG- -5'
24518 5' -54.5 NC_005264.1 + 162325 0.66 0.953812
Target:  5'- aUCgGUCGGCCugGGCcacggagGGAGGAgGGa -3'
miRNA:   3'- gGGgUAGCCGGugCCG-------CCUUUUgUUg -5'
24518 5' -54.5 NC_005264.1 + 149636 0.66 0.958018
Target:  5'- gCCC---GGCgACGGCGGc-GGCGACg -3'
miRNA:   3'- gGGGuagCCGgUGCCGCCuuUUGUUG- -5'
24518 5' -54.5 NC_005264.1 + 138595 0.66 0.954206
Target:  5'- aCUUCcgCGGCaGCGGUGGGGuGCAAg -3'
miRNA:   3'- -GGGGuaGCCGgUGCCGCCUUuUGUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.