Results 21 - 39 of 39 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24519 | 3' | -56.5 | NC_005264.1 | + | 69609 | 0.69 | 0.727252 |
Target: 5'- gGCGCCGcccGGCGUgAGAacGACAGGCu-- -3' miRNA: 3'- aUGCGGC---UCGUAgUCU--CUGUCCGcac -5' |
|||||||
24519 | 3' | -56.5 | NC_005264.1 | + | 45379 | 0.69 | 0.727252 |
Target: 5'- gAgGUCGAGUAuggguUCAGAGACAcGGCGa- -3' miRNA: 3'- aUgCGGCUCGU-----AGUCUCUGU-CCGCac -5' |
|||||||
24519 | 3' | -56.5 | NC_005264.1 | + | 20512 | 0.69 | 0.717319 |
Target: 5'- cUGCGCCGAGaagcCAGGGGCAcGCGUu -3' miRNA: 3'- -AUGCGGCUCgua-GUCUCUGUcCGCAc -5' |
|||||||
24519 | 3' | -56.5 | NC_005264.1 | + | 129517 | 0.7 | 0.697243 |
Target: 5'- gGCGCCGgaGGCGaCGGAaccacuGCGGGCGUGg -3' miRNA: 3'- aUGCGGC--UCGUaGUCUc-----UGUCCGCAC- -5' |
|||||||
24519 | 3' | -56.5 | NC_005264.1 | + | 4032 | 0.7 | 0.666738 |
Target: 5'- cGgGCCGAuGCAUCAgGAGACgauGGGCGa- -3' miRNA: 3'- aUgCGGCU-CGUAGU-CUCUG---UCCGCac -5' |
|||||||
24519 | 3' | -56.5 | NC_005264.1 | + | 77976 | 0.7 | 0.666738 |
Target: 5'- gGCGCCGcGCGUacCGGAG-CGGGCGa- -3' miRNA: 3'- aUGCGGCuCGUA--GUCUCuGUCCGCac -5' |
|||||||
24519 | 3' | -56.5 | NC_005264.1 | + | 123059 | 0.7 | 0.666738 |
Target: 5'- cGgGCCGAuGCAUCAgGAGACgauGGGCGa- -3' miRNA: 3'- aUgCGGCU-CGUAGU-CUCUG---UCCGCac -5' |
|||||||
24519 | 3' | -56.5 | NC_005264.1 | + | 142978 | 0.7 | 0.656502 |
Target: 5'- gGCGgucucUCGGGCAU--GAGGCGGGCGUGg -3' miRNA: 3'- aUGC-----GGCUCGUAguCUCUGUCCGCAC- -5' |
|||||||
24519 | 3' | -56.5 | NC_005264.1 | + | 151755 | 0.7 | 0.64522 |
Target: 5'- gACGCCGcAGCAUCGuaauuacGAGGCGGGUa-- -3' miRNA: 3'- aUGCGGC-UCGUAGU-------CUCUGUCCGcac -5' |
|||||||
24519 | 3' | -56.5 | NC_005264.1 | + | 73050 | 0.71 | 0.635979 |
Target: 5'- aGCGCCGgcGGUAUgcggcCAGAGACGuGGCGUa -3' miRNA: 3'- aUGCGGC--UCGUA-----GUCUCUGU-CCGCAc -5' |
|||||||
24519 | 3' | -56.5 | NC_005264.1 | + | 116414 | 0.71 | 0.635979 |
Target: 5'- gACGUCGAGCG-CAG-GGC-GGCGUGc -3' miRNA: 3'- aUGCGGCUCGUaGUCuCUGuCCGCAC- -5' |
|||||||
24519 | 3' | -56.5 | NC_005264.1 | + | 144671 | 0.72 | 0.564453 |
Target: 5'- uUGCGCCGAGCGUCAGccGACAaGCcUGu -3' miRNA: 3'- -AUGCGGCUCGUAGUCu-CUGUcCGcAC- -5' |
|||||||
24519 | 3' | -56.5 | NC_005264.1 | + | 54704 | 0.72 | 0.554372 |
Target: 5'- gGCGCCGAGgA-CAGGGugGGaaGCGUGg -3' miRNA: 3'- aUGCGGCUCgUaGUCUCugUC--CGCAC- -5' |
|||||||
24519 | 3' | -56.5 | NC_005264.1 | + | 28687 | 0.72 | 0.554372 |
Target: 5'- cGCGCCGAGCuaCAGAuucuGuuGGGCGUGg -3' miRNA: 3'- aUGCGGCUCGuaGUCU----CugUCCGCAC- -5' |
|||||||
24519 | 3' | -56.5 | NC_005264.1 | + | 13324 | 0.72 | 0.534375 |
Target: 5'- cGCGCgGAGCAggaGGAGAgGGGCGc- -3' miRNA: 3'- aUGCGgCUCGUag-UCUCUgUCCGCac -5' |
|||||||
24519 | 3' | -56.5 | NC_005264.1 | + | 132351 | 0.72 | 0.534375 |
Target: 5'- cGCGCgGAGCAggaGGAGAgGGGCGc- -3' miRNA: 3'- aUGCGgCUCGUag-UCUCUgUCCGCac -5' |
|||||||
24519 | 3' | -56.5 | NC_005264.1 | + | 139719 | 0.73 | 0.495208 |
Target: 5'- --gGCCGAGCAUUAGGGACcgGGGCc-- -3' miRNA: 3'- augCGGCUCGUAGUCUCUG--UCCGcac -5' |
|||||||
24519 | 3' | -56.5 | NC_005264.1 | + | 111073 | 0.76 | 0.367824 |
Target: 5'- cGCGCCGGGCGauugcaucucgcucUCAGAGAUGGGCu-- -3' miRNA: 3'- aUGCGGCUCGU--------------AGUCUCUGUCCGcac -5' |
|||||||
24519 | 3' | -56.5 | NC_005264.1 | + | 14075 | 1.02 | 0.007604 |
Target: 5'- cAUGCCGAGCAUCAGAGACAGGCGUGc -3' miRNA: 3'- aUGCGGCUCGUAGUCUCUGUCCGCAC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home