Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24519 | 5' | -54.9 | NC_005264.1 | + | 74142 | 0.66 | 0.951641 |
Target: 5'- cGGCAUGcacgCCAcgcagcUGCuUCGGCcucuuGGaUUGGCGg -3' miRNA: 3'- -CCGUAUa---GGU------ACG-AGCCG-----CC-AACCGC- -5' |
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24519 | 5' | -54.9 | NC_005264.1 | + | 76514 | 0.66 | 0.951641 |
Target: 5'- aGGCGaccGUCUAccgccGCuUCGGCGGUaucUGGCa -3' miRNA: 3'- -CCGUa--UAGGUa----CG-AGCCGCCA---ACCGc -5' |
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24519 | 5' | -54.9 | NC_005264.1 | + | 37583 | 0.66 | 0.947441 |
Target: 5'- cGGCAaGUCUcgcgGCggccgCGGCGGggGGUc -3' miRNA: 3'- -CCGUaUAGGua--CGa----GCCGCCaaCCGc -5' |
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24519 | 5' | -54.9 | NC_005264.1 | + | 156610 | 0.66 | 0.947441 |
Target: 5'- cGGCAaGUCUcgcgGCggccgCGGCGGggGGUc -3' miRNA: 3'- -CCGUaUAGGua--CGa----GCCGCCaaCCGc -5' |
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24519 | 5' | -54.9 | NC_005264.1 | + | 53227 | 0.66 | 0.933427 |
Target: 5'- cGCGUAUCUccGCgaaagCGGCGGaccGGCc -3' miRNA: 3'- cCGUAUAGGuaCGa----GCCGCCaa-CCGc -5' |
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24519 | 5' | -54.9 | NC_005264.1 | + | 23931 | 0.66 | 0.931908 |
Target: 5'- cGGCGguucugGUCgcgccgccgaugggUAUGUggGGCGGUUGGUGg -3' miRNA: 3'- -CCGUa-----UAG--------------GUACGagCCGCCAACCGC- -5' |
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24519 | 5' | -54.9 | NC_005264.1 | + | 111376 | 0.67 | 0.928279 |
Target: 5'- cGGCGUGUCCcacgacuucaggGUGCUCaucucugaGGaCGGagggGGCGa -3' miRNA: 3'- -CCGUAUAGG------------UACGAG--------CC-GCCaa--CCGC- -5' |
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24519 | 5' | -54.9 | NC_005264.1 | + | 25128 | 0.67 | 0.928279 |
Target: 5'- gGGC-UcgCCGUGuCUCGGCcgaguaGUUGGCc -3' miRNA: 3'- -CCGuAuaGGUAC-GAGCCGc-----CAACCGc -5' |
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24519 | 5' | -54.9 | NC_005264.1 | + | 156168 | 0.67 | 0.917261 |
Target: 5'- cGCAUAUgCGcgGCUUuGCGGcgUGGCGg -3' miRNA: 3'- cCGUAUAgGUa-CGAGcCGCCa-ACCGC- -5' |
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24519 | 5' | -54.9 | NC_005264.1 | + | 42047 | 0.67 | 0.910794 |
Target: 5'- cGGCcUAUCCAaucgcguUGCccgCGGCGcgUGGCGu -3' miRNA: 3'- -CCGuAUAGGU-------ACGa--GCCGCcaACCGC- -5' |
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24519 | 5' | -54.9 | NC_005264.1 | + | 57995 | 0.67 | 0.905289 |
Target: 5'- cGGCGg--CCGUgGCUCaGCGGccccGGCGg -3' miRNA: 3'- -CCGUauaGGUA-CGAGcCGCCaa--CCGC- -5' |
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24519 | 5' | -54.9 | NC_005264.1 | + | 123587 | 0.67 | 0.898301 |
Target: 5'- cGGCGacccGUCCAUGUguuacguUCGGCcGGUauUGGUGu -3' miRNA: 3'- -CCGUa---UAGGUACG-------AGCCG-CCA--ACCGC- -5' |
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24519 | 5' | -54.9 | NC_005264.1 | + | 94936 | 0.68 | 0.892375 |
Target: 5'- cGGCcguUAUCUAcGCgUCGGUGGUgGGCc -3' miRNA: 3'- -CCGu--AUAGGUaCG-AGCCGCCAaCCGc -5' |
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24519 | 5' | -54.9 | NC_005264.1 | + | 157360 | 0.68 | 0.885573 |
Target: 5'- uGGCGgg-CCcuggccgugAUGCUgGGCGGcggGGCGg -3' miRNA: 3'- -CCGUauaGG---------UACGAgCCGCCaa-CCGC- -5' |
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24519 | 5' | -54.9 | NC_005264.1 | + | 38333 | 0.68 | 0.885573 |
Target: 5'- uGGCGgg-CCcuggccgugAUGCUgGGCGGcggGGCGg -3' miRNA: 3'- -CCGUauaGG---------UACGAgCCGCCaa-CCGC- -5' |
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24519 | 5' | -54.9 | NC_005264.1 | + | 48156 | 0.68 | 0.863834 |
Target: 5'- cGCA-AUCC-UGCUCGGCG--UGGCu -3' miRNA: 3'- cCGUaUAGGuACGAGCCGCcaACCGc -5' |
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24519 | 5' | -54.9 | NC_005264.1 | + | 94602 | 0.69 | 0.848285 |
Target: 5'- cGGCGcGggCAUgGCUUGGCGGUgcGGCGu -3' miRNA: 3'- -CCGUaUagGUA-CGAGCCGCCAa-CCGC- -5' |
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24519 | 5' | -54.9 | NC_005264.1 | + | 68231 | 0.69 | 0.840212 |
Target: 5'- -aCGUAUCCGcGC-CGGCGGcgGGCu -3' miRNA: 3'- ccGUAUAGGUaCGaGCCGCCaaCCGc -5' |
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24519 | 5' | -54.9 | NC_005264.1 | + | 103741 | 0.7 | 0.796247 |
Target: 5'- cGGCGgccgCCAUGCUUagguucaugcugaGGCGGgcGGCc -3' miRNA: 3'- -CCGUaua-GGUACGAG-------------CCGCCaaCCGc -5' |
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24519 | 5' | -54.9 | NC_005264.1 | + | 139432 | 0.7 | 0.788055 |
Target: 5'- uGGCGUAcgCGUGCUCGGCcGUcacaagagGGCGg -3' miRNA: 3'- -CCGUAUagGUACGAGCCGcCAa-------CCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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