miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24519 5' -54.9 NC_005264.1 + 158853 0.74 0.558275
Target:  5'- aGGCAUGUgCCGcccUGCUUGGCGGUaaagccggccGGCGc -3'
miRNA:   3'- -CCGUAUA-GGU---ACGAGCCGCCAa---------CCGC- -5'
24519 5' -54.9 NC_005264.1 + 158094 0.71 0.736737
Target:  5'- cGGCG-GUCCAcccccggacgccgGCUCGGCGGgcagcGGCGu -3'
miRNA:   3'- -CCGUaUAGGUa------------CGAGCCGCCaa---CCGC- -5'
24519 5' -54.9 NC_005264.1 + 157360 0.68 0.885573
Target:  5'- uGGCGgg-CCcuggccgugAUGCUgGGCGGcggGGCGg -3'
miRNA:   3'- -CCGUauaGG---------UACGAgCCGCCaa-CCGC- -5'
24519 5' -54.9 NC_005264.1 + 156610 0.66 0.947441
Target:  5'- cGGCAaGUCUcgcgGCggccgCGGCGGggGGUc -3'
miRNA:   3'- -CCGUaUAGGua--CGa----GCCGCCaaCCGc -5'
24519 5' -54.9 NC_005264.1 + 156168 0.67 0.917261
Target:  5'- cGCAUAUgCGcgGCUUuGCGGcgUGGCGg -3'
miRNA:   3'- cCGUAUAgGUa-CGAGcCGCCa-ACCGC- -5'
24519 5' -54.9 NC_005264.1 + 150539 0.72 0.660329
Target:  5'- aGGCGgcUCCAgGCUCgGGCGGggagGGCc -3'
miRNA:   3'- -CCGUauAGGUaCGAG-CCGCCaa--CCGc -5'
24519 5' -54.9 NC_005264.1 + 139432 0.7 0.788055
Target:  5'- uGGCGUAcgCGUGCUCGGCcGUcacaagagGGCGg -3'
miRNA:   3'- -CCGUAUagGUACGAGCCGcCAa-------CCGC- -5'
24519 5' -54.9 NC_005264.1 + 123587 0.67 0.898301
Target:  5'- cGGCGacccGUCCAUGUguuacguUCGGCcGGUauUGGUGu -3'
miRNA:   3'- -CCGUa---UAGGUACG-------AGCCG-CCA--ACCGC- -5'
24519 5' -54.9 NC_005264.1 + 111376 0.67 0.928279
Target:  5'- cGGCGUGUCCcacgacuucaggGUGCUCaucucugaGGaCGGagggGGCGa -3'
miRNA:   3'- -CCGUAUAGG------------UACGAG--------CC-GCCaa--CCGC- -5'
24519 5' -54.9 NC_005264.1 + 108382 0.73 0.598865
Target:  5'- cGGCccuUA-CCA-GCUCGGCGGUgGGCa -3'
miRNA:   3'- -CCGu--AUaGGUaCGAGCCGCCAaCCGc -5'
24519 5' -54.9 NC_005264.1 + 103741 0.7 0.796247
Target:  5'- cGGCGgccgCCAUGCUUagguucaugcugaGGCGGgcGGCc -3'
miRNA:   3'- -CCGUaua-GGUACGAG-------------CCGCCaaCCGc -5'
24519 5' -54.9 NC_005264.1 + 94936 0.68 0.892375
Target:  5'- cGGCcguUAUCUAcGCgUCGGUGGUgGGCc -3'
miRNA:   3'- -CCGu--AUAGGUaCG-AGCCGCCAaCCGc -5'
24519 5' -54.9 NC_005264.1 + 94602 0.69 0.848285
Target:  5'- cGGCGcGggCAUgGCUUGGCGGUgcGGCGu -3'
miRNA:   3'- -CCGUaUagGUA-CGAGCCGCCAa-CCGC- -5'
24519 5' -54.9 NC_005264.1 + 91550 0.73 0.639844
Target:  5'- cGCAUAUCgG-GCgCGGCGGggGGCa -3'
miRNA:   3'- cCGUAUAGgUaCGaGCCGCCaaCCGc -5'
24519 5' -54.9 NC_005264.1 + 80157 0.71 0.710987
Target:  5'- gGGCGUAUuugucaCCggGCUCGGCGcGaaGGCGg -3'
miRNA:   3'- -CCGUAUA------GGuaCGAGCCGC-CaaCCGC- -5'
24519 5' -54.9 NC_005264.1 + 76514 0.66 0.951641
Target:  5'- aGGCGaccGUCUAccgccGCuUCGGCGGUaucUGGCa -3'
miRNA:   3'- -CCGUa--UAGGUa----CG-AGCCGCCA---ACCGc -5'
24519 5' -54.9 NC_005264.1 + 74142 0.66 0.951641
Target:  5'- cGGCAUGcacgCCAcgcagcUGCuUCGGCcucuuGGaUUGGCGg -3'
miRNA:   3'- -CCGUAUa---GGU------ACG-AGCCG-----CC-AACCGC- -5'
24519 5' -54.9 NC_005264.1 + 68231 0.69 0.840212
Target:  5'- -aCGUAUCCGcGC-CGGCGGcgGGCu -3'
miRNA:   3'- ccGUAUAGGUaCGaGCCGCCaaCCGc -5'
24519 5' -54.9 NC_005264.1 + 60949 0.7 0.788055
Target:  5'- aGUGUucuccgCCGUGUUCGuGUGGUUGGUGg -3'
miRNA:   3'- cCGUAua----GGUACGAGC-CGCCAACCGC- -5'
24519 5' -54.9 NC_005264.1 + 59933 0.73 0.619336
Target:  5'- cGUAcgAUCCGaGCUCGGCGGUuaucaUGGUGu -3'
miRNA:   3'- cCGUa-UAGGUaCGAGCCGCCA-----ACCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.