miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24520 3' -63.4 NC_005264.1 + 19994 0.67 0.59764
Target:  5'- --aCCGaCCgCGCUCGCUCGCa-UCCGg -3'
miRNA:   3'- gggGGCaGG-GUGAGCGAGCGggAGGC- -5'
24520 3' -63.4 NC_005264.1 + 108585 0.67 0.588145
Target:  5'- gCCCCGcUCCCACUCGacacguuggCGCgCggggCCGc -3'
miRNA:   3'- gGGGGC-AGGGUGAGCga-------GCGgGa---GGC- -5'
24520 3' -63.4 NC_005264.1 + 152112 0.67 0.588145
Target:  5'- gCCgCUCGUuucCCCGCUUGCUUGCUCgCUGa -3'
miRNA:   3'- -GG-GGGCA---GGGUGAGCGAGCGGGaGGC- -5'
24520 3' -63.4 NC_005264.1 + 119523 0.67 0.588145
Target:  5'- cCCCCCG-CUC-CUCcCUCcuCCCUCCGu -3'
miRNA:   3'- -GGGGGCaGGGuGAGcGAGc-GGGAGGC- -5'
24520 3' -63.4 NC_005264.1 + 33085 0.67 0.588145
Target:  5'- gCCgCUCGUuucCCCGCUUGCUUGCUCgCUGa -3'
miRNA:   3'- -GG-GGGCA---GGGUGAGCGAGCGGGaGGC- -5'
24520 3' -63.4 NC_005264.1 + 496 0.67 0.588145
Target:  5'- cCCCCCG-CUC-CUCcCUCcuCCCUCCGu -3'
miRNA:   3'- -GGGGGCaGGGuGAGcGAGc-GGGAGGC- -5'
24520 3' -63.4 NC_005264.1 + 154063 0.67 0.578679
Target:  5'- gUCCUGgccgacgCCCGC-CGUUCGCCuCUCCc -3'
miRNA:   3'- gGGGGCa------GGGUGaGCGAGCGG-GAGGc -5'
24520 3' -63.4 NC_005264.1 + 35036 0.67 0.578679
Target:  5'- gUCCUGgccgacgCCCGC-CGUUCGCCuCUCCc -3'
miRNA:   3'- gGGGGCa------GGGUGaGCGAGCGG-GAGGc -5'
24520 3' -63.4 NC_005264.1 + 126844 0.67 0.569245
Target:  5'- gCCUCGUCgCUGCgCGuUUCGCUCUCCGc -3'
miRNA:   3'- gGGGGCAG-GGUGaGC-GAGCGGGAGGC- -5'
24520 3' -63.4 NC_005264.1 + 53225 0.67 0.569245
Target:  5'- cCCCCCG-CCCACgccaUUUGCUUUCCGu -3'
miRNA:   3'- -GGGGGCaGGGUGagc-GAGCGGGAGGC- -5'
24520 3' -63.4 NC_005264.1 + 42100 0.67 0.55985
Target:  5'- uCCCUCGUCgUCGCagUCGCcggcacCGUCCUCCGc -3'
miRNA:   3'- -GGGGGCAG-GGUG--AGCGa-----GCGGGAGGC- -5'
24520 3' -63.4 NC_005264.1 + 77919 0.67 0.55985
Target:  5'- gCUuuGUCCCGCgccugGCUcuuccCGCCCUCCc -3'
miRNA:   3'- gGGggCAGGGUGag---CGA-----GCGGGAGGc -5'
24520 3' -63.4 NC_005264.1 + 102425 0.67 0.550499
Target:  5'- aCCCCGUCCCcaAgUgGUUCcugGCCCUUCa -3'
miRNA:   3'- gGGGGCAGGG--UgAgCGAG---CGGGAGGc -5'
24520 3' -63.4 NC_005264.1 + 62285 0.67 0.550499
Target:  5'- gCCCuuGUCCCGCgauCUCGgCCgUCCu -3'
miRNA:   3'- -GGGggCAGGGUGagcGAGC-GGgAGGc -5'
24520 3' -63.4 NC_005264.1 + 38499 0.68 0.531946
Target:  5'- cUCCCCGuacUCCCGCcagUCGCcCGCCC-CaCGg -3'
miRNA:   3'- -GGGGGC---AGGGUG---AGCGaGCGGGaG-GC- -5'
24520 3' -63.4 NC_005264.1 + 157526 0.68 0.531946
Target:  5'- cUCCCCGuacUCCCGCcagUCGCcCGCCC-CaCGg -3'
miRNA:   3'- -GGGGGC---AGGGUG---AGCGaGCGGGaG-GC- -5'
24520 3' -63.4 NC_005264.1 + 157928 0.68 0.513624
Target:  5'- cUCCUCGUUCgCAUcuucgUCGCUCGCC-UCCGc -3'
miRNA:   3'- -GGGGGCAGG-GUG-----AGCGAGCGGgAGGC- -5'
24520 3' -63.4 NC_005264.1 + 77362 0.68 0.513624
Target:  5'- aUCUCCGUCCCGuCUagCGCgUCGCCCguaaggaguUCCa -3'
miRNA:   3'- -GGGGGCAGGGU-GA--GCG-AGCGGG---------AGGc -5'
24520 3' -63.4 NC_005264.1 + 75782 0.68 0.513624
Target:  5'- uUCUCGUUCgCGCUCGCcuccaggucgUCGCCgUCCGu -3'
miRNA:   3'- gGGGGCAGG-GUGAGCG----------AGCGGgAGGC- -5'
24520 3' -63.4 NC_005264.1 + 149556 0.68 0.499154
Target:  5'- gCUCCaCGaCCCGcCUCGCuggcgcgaacccucgUCGUCCUCCGa -3'
miRNA:   3'- -GGGG-GCaGGGU-GAGCG---------------AGCGGGAGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.