miRNA display CGI


Results 21 - 40 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24520 5' -52.6 NC_005264.1 + 127004 0.66 0.983275
Target:  5'- cCACGAAGguCCgugcacGGGCCGCcauuGCGGGgCCg -3'
miRNA:   3'- -GUGCUUU--GGau----CUUGGCG----UGCCCaGG- -5'
24520 5' -52.6 NC_005264.1 + 68734 0.66 0.981272
Target:  5'- aGCGgcGCC-AGAACCucGgGCGGGUUUa -3'
miRNA:   3'- gUGCuuUGGaUCUUGG--CgUGCCCAGG- -5'
24520 5' -52.6 NC_005264.1 + 6134 0.66 0.981272
Target:  5'- uCGCGAAGcaccgcccguCCUGGGucUCGCGCGGG-CUg -3'
miRNA:   3'- -GUGCUUU----------GGAUCUu-GGCGUGCCCaGG- -5'
24520 5' -52.6 NC_005264.1 + 5836 0.67 0.979987
Target:  5'- cCGCGAaagcuugagguaucgGACCUuuaGGAagacccgcGCCGCgaGCGuGGUCCa -3'
miRNA:   3'- -GUGCU---------------UUGGA---UCU--------UGGCG--UGC-CCAGG- -5'
24520 5' -52.6 NC_005264.1 + 106444 0.67 0.979095
Target:  5'- gCACGAGcgGCUUcGGAGgCGCGCuGGUUCg -3'
miRNA:   3'- -GUGCUU--UGGA-UCUUgGCGUGcCCAGG- -5'
24520 5' -52.6 NC_005264.1 + 39339 0.67 0.979095
Target:  5'- cCGCGAGcacaucGCCcAGcAACCGCGCGGccaCCg -3'
miRNA:   3'- -GUGCUU------UGGaUC-UUGGCGUGCCca-GG- -5'
24520 5' -52.6 NC_005264.1 + 143794 0.67 0.979095
Target:  5'- cCGCGGGuauuuaugcACCUGGAACCGCcuGCGc-UCCg -3'
miRNA:   3'- -GUGCUU---------UGGAUCUUGGCG--UGCccAGG- -5'
24520 5' -52.6 NC_005264.1 + 53266 0.67 0.976736
Target:  5'- gACGuuuuCgCUAGAuccugGCCGCGCGGGcUUCg -3'
miRNA:   3'- gUGCuuu-G-GAUCU-----UGGCGUGCCC-AGG- -5'
24520 5' -52.6 NC_005264.1 + 49366 0.67 0.974186
Target:  5'- uCGCGcGACCgUGGcacGACCGCG-GGGUCg -3'
miRNA:   3'- -GUGCuUUGG-AUC---UUGGCGUgCCCAGg -5'
24520 5' -52.6 NC_005264.1 + 107980 0.67 0.974186
Target:  5'- aGCGuGACCgUGGAugCGgGCGGcUCCc -3'
miRNA:   3'- gUGCuUUGG-AUCUugGCgUGCCcAGG- -5'
24520 5' -52.6 NC_005264.1 + 57894 0.67 0.973921
Target:  5'- cCACGAGgcucggcGCUUGGcACgGCugGGGguUCCg -3'
miRNA:   3'- -GUGCUU-------UGGAUCuUGgCGugCCC--AGG- -5'
24520 5' -52.6 NC_005264.1 + 129515 0.67 0.968489
Target:  5'- -uCGGAACCUGcuacgaaucGAuuucgguacucGCCGaGCGGGUCCu -3'
miRNA:   3'- guGCUUUGGAU---------CU-----------UGGCgUGCCCAGG- -5'
24520 5' -52.6 NC_005264.1 + 10488 0.67 0.968489
Target:  5'- -uCGGAACCUGcuacgaaucGAuuucgguacucGCCGaGCGGGUCCu -3'
miRNA:   3'- guGCUUUGGAU---------CU-----------UGGCgUGCCCAGG- -5'
24520 5' -52.6 NC_005264.1 + 81800 0.68 0.965328
Target:  5'- cCGCGAAACCaauuAaaGCAUGGcGUCCa -3'
miRNA:   3'- -GUGCUUUGGaucuUggCGUGCC-CAGG- -5'
24520 5' -52.6 NC_005264.1 + 162651 0.68 0.961951
Target:  5'- -uCGAGGCUcGGAAgCGCgccgGCGGGUCg -3'
miRNA:   3'- guGCUUUGGaUCUUgGCG----UGCCCAGg -5'
24520 5' -52.6 NC_005264.1 + 124634 0.68 0.961951
Target:  5'- gGCGA--CC-GGAGCCGCuauCGGG-CCg -3'
miRNA:   3'- gUGCUuuGGaUCUUGGCGu--GCCCaGG- -5'
24520 5' -52.6 NC_005264.1 + 16439 0.68 0.961951
Target:  5'- cCGCGggGCCU---GCC-CGCGGGUg- -3'
miRNA:   3'- -GUGCuuUGGAucuUGGcGUGCCCAgg -5'
24520 5' -52.6 NC_005264.1 + 5607 0.68 0.961951
Target:  5'- gGCGA--CC-GGAGCCGCuauCGGG-CCg -3'
miRNA:   3'- gUGCUuuGGaUCUUGGCGu--GCCCaGG- -5'
24520 5' -52.6 NC_005264.1 + 89764 0.68 0.961951
Target:  5'- -uCGAAG--UAGAgauGCCGCGCGGG-CCa -3'
miRNA:   3'- guGCUUUggAUCU---UGGCGUGCCCaGG- -5'
24520 5' -52.6 NC_005264.1 + 34775 0.68 0.961951
Target:  5'- aCACGAAGau--GAGCCGCucauGCGGGcggCCa -3'
miRNA:   3'- -GUGCUUUggauCUUGGCG----UGCCCa--GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.