miRNA display CGI


Results 21 - 40 of 301 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24521 3' -57.7 NC_005264.1 + 68043 0.66 0.877057
Target:  5'- -aACCGcuUCCGUGCCCGacgaGGCGGCGa -3'
miRNA:   3'- cgUGGU--AGGUGCGGGUag--CCGCUGCg -5'
24521 3' -57.7 NC_005264.1 + 79288 0.66 0.877057
Target:  5'- uGCAUCuucUCCAUGCggaCCGUCGG--GCGCg -3'
miRNA:   3'- -CGUGGu--AGGUGCG---GGUAGCCgcUGCG- -5'
24521 3' -57.7 NC_005264.1 + 76376 0.66 0.877057
Target:  5'- gGUACCcgCUAaccacguguuCGCCuCGagGGCGugGCa -3'
miRNA:   3'- -CGUGGuaGGU----------GCGG-GUagCCGCugCG- -5'
24521 3' -57.7 NC_005264.1 + 69273 0.66 0.877057
Target:  5'- gGCGCCAugauUUUACGCCCcuguggacucugAUgGGCGcuaaaACGCa -3'
miRNA:   3'- -CGUGGU----AGGUGCGGG------------UAgCCGC-----UGCG- -5'
24521 3' -57.7 NC_005264.1 + 41061 0.66 0.875655
Target:  5'- gGCGCCguccuugggucauguGUCCAUaucuccuagacuaggGCCuCGagGGCGGCGCc -3'
miRNA:   3'- -CGUGG---------------UAGGUG---------------CGG-GUagCCGCUGCG- -5'
24521 3' -57.7 NC_005264.1 + 116008 0.66 0.872828
Target:  5'- -gGCCGUguaCAUGUgCAacaccuuccuucacuUCGGCGGCGCg -3'
miRNA:   3'- cgUGGUAg--GUGCGgGU---------------AGCCGCUGCG- -5'
24521 3' -57.7 NC_005264.1 + 69844 0.66 0.869969
Target:  5'- uGCcCCcgCUACGgCCGgugCuGCGGCGCg -3'
miRNA:   3'- -CGuGGuaGGUGCgGGUa--GcCGCUGCG- -5'
24521 3' -57.7 NC_005264.1 + 69336 0.66 0.869969
Target:  5'- aGUugCGUgaaccucgacUCugGCCCGUUuGUGGCGCg -3'
miRNA:   3'- -CGugGUA----------GGugCGGGUAGcCGCUGCG- -5'
24521 3' -57.7 NC_005264.1 + 35741 0.66 0.869969
Target:  5'- aCGCCGcCCGUGCCCGacugCGGCcgcGACGUg -3'
miRNA:   3'- cGUGGUaGGUGCGGGUa---GCCG---CUGCG- -5'
24521 3' -57.7 NC_005264.1 + 46396 0.66 0.869969
Target:  5'- cGCcCCgAUCguCGCCCccgCGGCcaGACGCc -3'
miRNA:   3'- -CGuGG-UAGguGCGGGua-GCCG--CUGCG- -5'
24521 3' -57.7 NC_005264.1 + 26112 0.66 0.869969
Target:  5'- -gGCCA-CCGCGCggcUCGUgGcGCGGCGCc -3'
miRNA:   3'- cgUGGUaGGUGCG---GGUAgC-CGCUGCG- -5'
24521 3' -57.7 NC_005264.1 + 132824 0.66 0.869969
Target:  5'- -aACC-UCCGCaGCaCAUCuGCGGCGCu -3'
miRNA:   3'- cgUGGuAGGUG-CGgGUAGcCGCUGCG- -5'
24521 3' -57.7 NC_005264.1 + 142723 0.66 0.869969
Target:  5'- cGCAUCGUCgACuaCCuaAUCGGCuauACGCg -3'
miRNA:   3'- -CGUGGUAGgUGcgGG--UAGCCGc--UGCG- -5'
24521 3' -57.7 NC_005264.1 + 103049 0.66 0.869969
Target:  5'- uGCGCUA--CGCGCCCccugCgGGCGACGa -3'
miRNA:   3'- -CGUGGUagGUGCGGGua--G-CCGCUGCg -5'
24521 3' -57.7 NC_005264.1 + 154767 0.66 0.869969
Target:  5'- aCGCCGcCCGUGCCCGacugCGGCcgcGACGUg -3'
miRNA:   3'- cGUGGUaGGUGCGGGUa---GCCG---CUGCG- -5'
24521 3' -57.7 NC_005264.1 + 96651 0.66 0.869969
Target:  5'- cGCACCG-CC-CGCCgAUgCGgGCGguGCGCu -3'
miRNA:   3'- -CGUGGUaGGuGCGGgUA-GC-CGC--UGCG- -5'
24521 3' -57.7 NC_005264.1 + 132604 0.66 0.869249
Target:  5'- gGCACCGcuuugCCGCGCUggCcgCGGaaaccuauguuacCGACGCg -3'
miRNA:   3'- -CGUGGUa----GGUGCGG--GuaGCC-------------GCUGCG- -5'
24521 3' -57.7 NC_005264.1 + 53957 0.66 0.867803
Target:  5'- cGCACCAcauggcgucacuuaUUgGCGCCgGaaCGGCGGCGa -3'
miRNA:   3'- -CGUGGU--------------AGgUGCGGgUa-GCCGCUGCg -5'
24521 3' -57.7 NC_005264.1 + 116560 0.66 0.862679
Target:  5'- gGCGgCGUCgAUGCgCAgcUCGGCGACc- -3'
miRNA:   3'- -CGUgGUAGgUGCGgGU--AGCCGCUGcg -5'
24521 3' -57.7 NC_005264.1 + 6664 0.66 0.862679
Target:  5'- gGCGCCG-CCACGCCgCAaa-GCcGCGCa -3'
miRNA:   3'- -CGUGGUaGGUGCGG-GUagcCGcUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.