miRNA display CGI


Results 21 - 40 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24522 3' -60.8 NC_005264.1 + 19428 0.68 0.578959
Target:  5'- cGCCGgguguGGCCGCGGGGcGCgGgUGGGu--- -3'
miRNA:   3'- -CGGC-----UCGGCGCUCC-CGgC-ACCCuuuu -5'
24522 3' -60.8 NC_005264.1 + 113035 0.68 0.569153
Target:  5'- uCCGcGGCCGCGAcuGGGCCGcGGcGAu-- -3'
miRNA:   3'- cGGC-UCGGCGCU--CCCGGCaCC-CUuuu -5'
24522 3' -60.8 NC_005264.1 + 63076 0.68 0.569153
Target:  5'- uCC-AGCUcgGCGAGGGCCGUcGcGGAAAGg -3'
miRNA:   3'- cGGcUCGG--CGCUCCCGGCA-C-CCUUUU- -5'
24522 3' -60.8 NC_005264.1 + 119932 0.69 0.54001
Target:  5'- cCCGuGUCGC--GGGCCGcUGGGggGAa -3'
miRNA:   3'- cGGCuCGGCGcuCCCGGC-ACCCuuUU- -5'
24522 3' -60.8 NC_005264.1 + 906 0.69 0.54001
Target:  5'- cCCGuGUCGC--GGGCCGcUGGGggGAa -3'
miRNA:   3'- cGGCuCGGCGcuCCCGGC-ACCCuuUU- -5'
24522 3' -60.8 NC_005264.1 + 133074 0.69 0.530405
Target:  5'- -gCGAGCCGCGAGcGaGCUGUGGu---- -3'
miRNA:   3'- cgGCUCGGCGCUC-C-CGGCACCcuuuu -5'
24522 3' -60.8 NC_005264.1 + 25606 0.69 0.530405
Target:  5'- cGCCGGGCCgGCGuugcggaacacGGcGGCgGUGGGGc-- -3'
miRNA:   3'- -CGGCUCGG-CGC-----------UC-CCGgCACCCUuuu -5'
24522 3' -60.8 NC_005264.1 + 2677 0.69 0.511388
Target:  5'- cCCGA-CCGCGAGGGCagcgugGUGGcGGAGGa -3'
miRNA:   3'- cGGCUcGGCGCUCCCGg-----CACC-CUUUU- -5'
24522 3' -60.8 NC_005264.1 + 108138 0.69 0.511388
Target:  5'- cGCCGGGaUCG-GGGGGCCGUcgagccucgcGGGGAGc -3'
miRNA:   3'- -CGGCUC-GGCgCUCCCGGCA----------CCCUUUu -5'
24522 3' -60.8 NC_005264.1 + 121704 0.69 0.511388
Target:  5'- cCCGA-CCGCGAGGGCagcgugGUGGcGGAGGa -3'
miRNA:   3'- cGGCUcGGCGCUCCCGg-----CACC-CUUUU- -5'
24522 3' -60.8 NC_005264.1 + 35007 0.69 0.501986
Target:  5'- cGCCGGccGCCGCgGAGGcaacGCUGUcGGGAGAu -3'
miRNA:   3'- -CGGCU--CGGCG-CUCC----CGGCA-CCCUUUu -5'
24522 3' -60.8 NC_005264.1 + 17688 0.7 0.483415
Target:  5'- aGCCGAgGCCGCGGcGGCuCGUgucggguguuaGGGAAAu -3'
miRNA:   3'- -CGGCU-CGGCGCUcCCG-GCA-----------CCCUUUu -5'
24522 3' -60.8 NC_005264.1 + 29480 0.71 0.43852
Target:  5'- cGCCGAGUCGUcgagGAGGGCCGcGGu---- -3'
miRNA:   3'- -CGGCUCGGCG----CUCCCGGCaCCcuuuu -5'
24522 3' -60.8 NC_005264.1 + 137846 0.71 0.43852
Target:  5'- cGCCuGAGCCGCaGGGGGUaCG-GGGAc-- -3'
miRNA:   3'- -CGG-CUCGGCG-CUCCCG-GCaCCCUuuu -5'
24522 3' -60.8 NC_005264.1 + 87635 0.71 0.412754
Target:  5'- gGCCGAugcaGCCGCGuGGGgCGcGGGAc-- -3'
miRNA:   3'- -CGGCU----CGGCGCuCCCgGCaCCCUuuu -5'
24522 3' -60.8 NC_005264.1 + 13806 0.73 0.341359
Target:  5'- cCCGGGCa--GGGGGCUGUGGGAc-- -3'
miRNA:   3'- cGGCUCGgcgCUCCCGGCACCCUuuu -5'
24522 3' -60.8 NC_005264.1 + 31523 0.75 0.254774
Target:  5'- gGCuCGGGCgGgGAGGGCCGuUGGGGu-- -3'
miRNA:   3'- -CG-GCUCGgCgCUCCCGGC-ACCCUuuu -5'
24522 3' -60.8 NC_005264.1 + 150550 0.75 0.254774
Target:  5'- gGCuCGGGCgGgGAGGGCCGuUGGGGu-- -3'
miRNA:   3'- -CG-GCUCGgCgCUCCCGGC-ACCCUuuu -5'
24522 3' -60.8 NC_005264.1 + 129900 0.77 0.178163
Target:  5'- uGCU--GCUGCGAGgGGCCGUGGGGAAu -3'
miRNA:   3'- -CGGcuCGGCGCUC-CCGGCACCCUUUu -5'
24522 3' -60.8 NC_005264.1 + 10874 0.77 0.178163
Target:  5'- uGCU--GCUGCGAGgGGCCGUGGGGAAu -3'
miRNA:   3'- -CGGcuCGGCGCUC-CCGGCACCCUUUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.