miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24523 5' -56 NC_005264.1 + 102779 0.66 0.912409
Target:  5'- -gCCaguUCGGUGGC-CUGUGuuGCGCGa -3'
miRNA:   3'- uaGGgauAGCUACCGcGACAU--CGCGC- -5'
24523 5' -56 NC_005264.1 + 67160 0.66 0.906322
Target:  5'- uUCCCUgugacgaagggGUgGAUGGCGgcCUGcAGCGCu -3'
miRNA:   3'- uAGGGA-----------UAgCUACCGC--GACaUCGCGc -5'
24523 5' -56 NC_005264.1 + 58264 0.66 0.893438
Target:  5'- gAUCCCgugggCGGcaUGGCGCUu--GCGCGc -3'
miRNA:   3'- -UAGGGaua--GCU--ACCGCGAcauCGCGC- -5'
24523 5' -56 NC_005264.1 + 59793 0.66 0.886648
Target:  5'- -gCCCgca-GggGGCGC-GUAGCGCa -3'
miRNA:   3'- uaGGGauagCuaCCGCGaCAUCGCGc -5'
24523 5' -56 NC_005264.1 + 142254 0.68 0.7982
Target:  5'- cAUCCCUAaCGAcuaUGgaacacccgcGCGCUGgcagAGCGCGa -3'
miRNA:   3'- -UAGGGAUaGCU---AC----------CGCGACa---UCGCGC- -5'
24523 5' -56 NC_005264.1 + 58353 0.68 0.7982
Target:  5'- -cCCCUGUCGuacucUGGCGggGccGGCGCGa -3'
miRNA:   3'- uaGGGAUAGCu----ACCGCgaCa-UCGCGC- -5'
24523 5' -56 NC_005264.1 + 137928 0.68 0.7982
Target:  5'- uGUCCCcuUUGGUGGUGCcgGUAucguuGCGCGa -3'
miRNA:   3'- -UAGGGauAGCUACCGCGa-CAU-----CGCGC- -5'
24523 5' -56 NC_005264.1 + 149234 0.68 0.7982
Target:  5'- gGUCaCUGUCGcUGGcCGgUGUGGCGCu -3'
miRNA:   3'- -UAGgGAUAGCuACC-GCgACAUCGCGc -5'
24523 5' -56 NC_005264.1 + 66492 0.71 0.671253
Target:  5'- aGUCCCgugccggCGAUGGCGCgGUacagcgAGCGUGc -3'
miRNA:   3'- -UAGGGaua----GCUACCGCGaCA------UCGCGC- -5'
24523 5' -56 NC_005264.1 + 9863 0.71 0.630158
Target:  5'- -cCCCUAUCG--GGCGCgGUcccGGCGCGc -3'
miRNA:   3'- uaGGGAUAGCuaCCGCGaCA---UCGCGC- -5'
24523 5' -56 NC_005264.1 + 128889 0.71 0.630158
Target:  5'- -cCCCUAUCG--GGCGCgGUcccGGCGCGc -3'
miRNA:   3'- uaGGGAUAGCuaCCGCGaCA---UCGCGC- -5'
24523 5' -56 NC_005264.1 + 50148 0.74 0.470449
Target:  5'- uUCCCUG-CGAUGGCGCacgagGGCGUGc -3'
miRNA:   3'- uAGGGAUaGCUACCGCGaca--UCGCGC- -5'
24523 5' -56 NC_005264.1 + 130845 1.06 0.00436
Target:  5'- cAUCCCUAUCGAUGGCGCUGUAGCGCGc -3'
miRNA:   3'- -UAGGGAUAGCUACCGCGACAUCGCGC- -5'
24523 5' -56 NC_005264.1 + 11819 1.06 0.00436
Target:  5'- cAUCCCUAUCGAUGGCGCUGUAGCGCGc -3'
miRNA:   3'- -UAGGGAUAGCUACCGCGACAUCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.