miRNA display CGI


Results 21 - 40 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24526 3' -63.4 NC_005264.1 + 122116 0.66 0.591967
Target:  5'- -gCgGCCgaggACCCGUUcgGGcgauUCCCGGCCCc -3'
miRNA:   3'- ugGgCGG----UGGGCGAa-CC----AGGGUCGGG- -5'
24526 3' -63.4 NC_005264.1 + 87122 0.66 0.582335
Target:  5'- cUCCGgCGCCCGCggGGcgCaCCAGUCUu -3'
miRNA:   3'- uGGGCgGUGGGCGaaCCa-G-GGUCGGG- -5'
24526 3' -63.4 NC_005264.1 + 42133 0.66 0.572735
Target:  5'- cGCCCGaCCGCCggcuuugucggCGCgaggccuuguUUGGUCCCuguAGCUCu -3'
miRNA:   3'- -UGGGC-GGUGG-----------GCG----------AACCAGGG---UCGGG- -5'
24526 3' -63.4 NC_005264.1 + 5836 0.67 0.563173
Target:  5'- -gCCGCCACUCGCcUGG-CCgCGguuaucGCCCu -3'
miRNA:   3'- ugGGCGGUGGGCGaACCaGG-GU------CGGG- -5'
24526 3' -63.4 NC_005264.1 + 109757 0.67 0.563173
Target:  5'- cACCaGCUuagacacuCCCGC-UGGUCCgCGGCCa -3'
miRNA:   3'- -UGGgCGGu-------GGGCGaACCAGG-GUCGGg -5'
24526 3' -63.4 NC_005264.1 + 124862 0.67 0.563173
Target:  5'- -gCCGCCACUCGCcUGG-CCgCGguuaucGCCCu -3'
miRNA:   3'- ugGGCGGUGGGCGaACCaGG-GU------CGGG- -5'
24526 3' -63.4 NC_005264.1 + 63051 0.67 0.553654
Target:  5'- cGCCUcgGCCGCCUugauCUcGGUCuCCAGCUCg -3'
miRNA:   3'- -UGGG--CGGUGGGc---GAaCCAG-GGUCGGG- -5'
24526 3' -63.4 NC_005264.1 + 73169 0.67 0.553654
Target:  5'- uGCCCaCCGCCaGCUc-GUCUCAGCUCa -3'
miRNA:   3'- -UGGGcGGUGGgCGAacCAGGGUCGGG- -5'
24526 3' -63.4 NC_005264.1 + 97992 0.67 0.553654
Target:  5'- gACCCGCgCACCggggauccaguaCGCaUGGUgCUGGCCg -3'
miRNA:   3'- -UGGGCG-GUGG------------GCGaACCAgGGUCGGg -5'
24526 3' -63.4 NC_005264.1 + 126678 0.67 0.553654
Target:  5'- aACgCCGCCugCCgGCUcGGagggCUCGGCCUc -3'
miRNA:   3'- -UG-GGCGGugGG-CGAaCCa---GGGUCGGG- -5'
24526 3' -63.4 NC_005264.1 + 7651 0.67 0.553654
Target:  5'- aACgCCGCCugCCgGCUcGGagggCUCGGCCUc -3'
miRNA:   3'- -UG-GGCGGugGG-CGAaCCa---GGGUCGGG- -5'
24526 3' -63.4 NC_005264.1 + 116764 0.67 0.541353
Target:  5'- cGCCCGCCGuCCCGCUuuuauaccacagaaUGGcUUCCGGg-- -3'
miRNA:   3'- -UGGGCGGU-GGGCGA--------------ACC-AGGGUCggg -5'
24526 3' -63.4 NC_005264.1 + 158409 0.67 0.538527
Target:  5'- uGCCCGCCGCCCGUcacuaaugagggaGGUUCaCAGUa- -3'
miRNA:   3'- -UGGGCGGUGGGCGaa-----------CCAGG-GUCGgg -5'
24526 3' -63.4 NC_005264.1 + 53230 0.67 0.534767
Target:  5'- cGCCCacGCCAUuuGCUU--UCCguGCCCc -3'
miRNA:   3'- -UGGG--CGGUGggCGAAccAGGguCGGG- -5'
24526 3' -63.4 NC_005264.1 + 160023 0.67 0.534767
Target:  5'- cUCCGCCaACCCGUUuaggUGGgcUCCCAGgCa -3'
miRNA:   3'- uGGGCGG-UGGGCGA----ACC--AGGGUCgGg -5'
24526 3' -63.4 NC_005264.1 + 158767 0.67 0.534767
Target:  5'- cGCCCGUgCAacagcCCCGCUgucgGGagaUCCCGucGCCCa -3'
miRNA:   3'- -UGGGCG-GU-----GGGCGAa---CC---AGGGU--CGGG- -5'
24526 3' -63.4 NC_005264.1 + 39741 0.67 0.534767
Target:  5'- cGCCCGUgCAacagcCCCGCUgucgGGagaUCCCGucGCCCa -3'
miRNA:   3'- -UGGGCG-GU-----GGGCGAa---CC---AGGGU--CGGG- -5'
24526 3' -63.4 NC_005264.1 + 40996 0.67 0.534767
Target:  5'- cUCCGCCaACCCGUUuaggUGGgcUCCCAGgCa -3'
miRNA:   3'- uGGGCGG-UGGGCGA----ACC--AGGGUCgGg -5'
24526 3' -63.4 NC_005264.1 + 41131 0.67 0.534767
Target:  5'- cUCCGCCACCaCGCUgcccucgcGGUCggGGCCa -3'
miRNA:   3'- uGGGCGGUGG-GCGAa-------CCAGggUCGGg -5'
24526 3' -63.4 NC_005264.1 + 160158 0.67 0.534767
Target:  5'- cUCCGCCACCaCGCUgcccucgcGGUCggGGCCa -3'
miRNA:   3'- uGGGCGGUGG-GCGAa-------CCAGggUCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.