miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24526 5' -48 NC_005264.1 + 66681 0.68 0.996354
Target:  5'- aGGGAAcuacCGGCGCCGGGCGGGgGGcGUAc -3'
miRNA:   3'- -CUCUUu---GUUGUGGUUUGCUCgUC-CAU- -5'
24526 5' -48 NC_005264.1 + 39127 0.68 0.996354
Target:  5'- uGGAcGCGGCGCCAcucgcccCGAcGCAGGUAu -3'
miRNA:   3'- cUCUuUGUUGUGGUuu-----GCU-CGUCCAU- -5'
24526 5' -48 NC_005264.1 + 52684 0.68 0.996354
Target:  5'- aGAGAuuCGugGCCGAuacCGAGUGGGa- -3'
miRNA:   3'- -CUCUuuGUugUGGUUu--GCUCGUCCau -5'
24526 5' -48 NC_005264.1 + 158154 0.68 0.996354
Target:  5'- uGGAcGCGGCGCCAcucgcccCGAcGCAGGUAu -3'
miRNA:   3'- cUCUuUGUUGUGGUuu-----GCU-CGUCCAU- -5'
24526 5' -48 NC_005264.1 + 124291 0.68 0.995702
Target:  5'- cGGGAGGCGagucGCgGCCGGACG-GCGGGg- -3'
miRNA:   3'- -CUCUUUGU----UG-UGGUUUGCuCGUCCau -5'
24526 5' -48 NC_005264.1 + 155275 0.68 0.995702
Target:  5'- -cGGAGCcGCACguGGCGgaAGCGGGUAg -3'
miRNA:   3'- cuCUUUGuUGUGguUUGC--UCGUCCAU- -5'
24526 5' -48 NC_005264.1 + 36248 0.68 0.995702
Target:  5'- -cGGAGCcGCACguGGCGgaAGCGGGUAg -3'
miRNA:   3'- cuCUUUGuUGUGguUUGC--UCGUCCAU- -5'
24526 5' -48 NC_005264.1 + 33647 0.68 0.995702
Target:  5'- cGAGGGcUGGgACCAAGCGgguGGCGGGUAu -3'
miRNA:   3'- -CUCUUuGUUgUGGUUUGC---UCGUCCAU- -5'
24526 5' -48 NC_005264.1 + 5264 0.68 0.995702
Target:  5'- cGGGAGGCGagucGCgGCCGGACG-GCGGGg- -3'
miRNA:   3'- -CUCUUUGU----UG-UGGUUUGCuCGUCCau -5'
24526 5' -48 NC_005264.1 + 101852 0.68 0.994957
Target:  5'- --cGAACucCACCGAGC-AGCAGGUAc -3'
miRNA:   3'- cucUUUGuuGUGGUUUGcUCGUCCAU- -5'
24526 5' -48 NC_005264.1 + 127632 0.68 0.994957
Target:  5'- aGAGAugAGCAacagucuccgGCGCUAGACGGGCuGGg- -3'
miRNA:   3'- -CUCU--UUGU----------UGUGGUUUGCUCGuCCau -5'
24526 5' -48 NC_005264.1 + 19416 0.68 0.994461
Target:  5'- gGGGAGGCGagGCGCCGGguguggccgcggggcGCGGGUGGGUu -3'
miRNA:   3'- -CUCUUUGU--UGUGGUU---------------UGCUCGUCCAu -5'
24526 5' -48 NC_005264.1 + 53548 0.68 0.99411
Target:  5'- uAGAGACAACAgCAAugGaAGCucgcGGUAc -3'
miRNA:   3'- cUCUUUGUUGUgGUUugC-UCGu---CCAU- -5'
24526 5' -48 NC_005264.1 + 145533 0.69 0.992075
Target:  5'- gGAGAAGCAGCgACCAuucaguuaGAUGGGCAGc-- -3'
miRNA:   3'- -CUCUUUGUUG-UGGU--------UUGCUCGUCcau -5'
24526 5' -48 NC_005264.1 + 152674 0.69 0.992075
Target:  5'- cGAGGGcUGGgACCAAGCGggGGCGGGUAu -3'
miRNA:   3'- -CUCUUuGUUgUGGUUUGC--UCGUCCAU- -5'
24526 5' -48 NC_005264.1 + 44124 0.69 0.989518
Target:  5'- -cGGGAUAGCGgCGAuuACGAGCGGGa- -3'
miRNA:   3'- cuCUUUGUUGUgGUU--UGCUCGUCCau -5'
24526 5' -48 NC_005264.1 + 22875 0.7 0.988019
Target:  5'- cGAGGGuucGCAGCAUCuc-CGGGCAGGg- -3'
miRNA:   3'- -CUCUU---UGUUGUGGuuuGCUCGUCCau -5'
24526 5' -48 NC_005264.1 + 67280 0.7 0.986358
Target:  5'- --uAGACGACG-CGAAUGGGCGGGUAu -3'
miRNA:   3'- cucUUUGUUGUgGUUUGCUCGUCCAU- -5'
24526 5' -48 NC_005264.1 + 48066 0.7 0.984527
Target:  5'- cAGGGACAucgGCCGAGCGGcGCAGGg- -3'
miRNA:   3'- cUCUUUGUug-UGGUUUGCU-CGUCCau -5'
24526 5' -48 NC_005264.1 + 149798 0.7 0.982515
Target:  5'- --cAAACGACAgCAGACGAGCGGccGUAg -3'
miRNA:   3'- cucUUUGUUGUgGUUUGCUCGUC--CAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.