miRNA display CGI


Results 21 - 40 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24527 3' -60.8 NC_005264.1 + 34751 0.66 0.715242
Target:  5'- gGCGCGcCGgUCGcCGCUgUCGCUACAcGAa -3'
miRNA:   3'- -UGCGCaGCgGGC-GCGG-AGCGAUGU-CU- -5'
24527 3' -60.8 NC_005264.1 + 155520 0.66 0.715242
Target:  5'- gACGCGggaUCuCCCGCGgCUCGUUccCAGAg -3'
miRNA:   3'- -UGCGC---AGcGGGCGCgGAGCGAu-GUCU- -5'
24527 3' -60.8 NC_005264.1 + 25546 0.66 0.715242
Target:  5'- uGC-CGUaCGCCCGCGUCgccgccaaCGCcGCGGAa -3'
miRNA:   3'- -UGcGCA-GCGGGCGCGGa-------GCGaUGUCU- -5'
24527 3' -60.8 NC_005264.1 + 94768 0.66 0.712365
Target:  5'- gACGCGaUCGCaaaguuccccgaucUCGcCGCCUCGUcggGCAGGa -3'
miRNA:   3'- -UGCGC-AGCG--------------GGC-GCGGAGCGa--UGUCU- -5'
24527 3' -60.8 NC_005264.1 + 58264 0.66 0.705629
Target:  5'- uACGCuUCgaGCCCGCuGCCUUGg-ACAGAg -3'
miRNA:   3'- -UGCGcAG--CGGGCG-CGGAGCgaUGUCU- -5'
24527 3' -60.8 NC_005264.1 + 90322 0.66 0.705629
Target:  5'- gAUGCaaagCGCCaCGCGCCUCucgGC-GCAGAu -3'
miRNA:   3'- -UGCGca--GCGG-GCGCGGAG---CGaUGUCU- -5'
24527 3' -60.8 NC_005264.1 + 7558 0.66 0.695957
Target:  5'- cACGCuacaucaucGUC-CCCGcCGCCUaccccgcgcCGCUGCGGAg -3'
miRNA:   3'- -UGCG---------CAGcGGGC-GCGGA---------GCGAUGUCU- -5'
24527 3' -60.8 NC_005264.1 + 120223 0.66 0.695957
Target:  5'- -aGCGgaccgggCGUCCGCgGCCaUgGCUGCGGGg -3'
miRNA:   3'- ugCGCa------GCGGGCG-CGG-AgCGAUGUCU- -5'
24527 3' -60.8 NC_005264.1 + 59697 0.66 0.695957
Target:  5'- uACGCuuugCGCCgCGCGCCgCGCcgGCGGc -3'
miRNA:   3'- -UGCGca--GCGG-GCGCGGaGCGa-UGUCu -5'
24527 3' -60.8 NC_005264.1 + 1196 0.66 0.695957
Target:  5'- -aGCGgaccgggCGUCCGCgGCCaUgGCUGCGGGg -3'
miRNA:   3'- ugCGCa------GCGGGCG-CGG-AgCGAUGUCU- -5'
24527 3' -60.8 NC_005264.1 + 60544 0.66 0.695957
Target:  5'- uGCGCucuggcaCGCCUGUGCCcguuUCGCUGCAc- -3'
miRNA:   3'- -UGCGca-----GCGGGCGCGG----AGCGAUGUcu -5'
24527 3' -60.8 NC_005264.1 + 65411 0.66 0.695957
Target:  5'- cCGCGgcggCGCCCGCaGCgCUCaCUGCcGAa -3'
miRNA:   3'- uGCGCa---GCGGGCG-CG-GAGcGAUGuCU- -5'
24527 3' -60.8 NC_005264.1 + 156082 0.66 0.695957
Target:  5'- uGCGCGaauacaUCGaugaacacuuCCCGCGCCaCGCcGCGGAg -3'
miRNA:   3'- -UGCGC------AGC----------GGGCGCGGaGCGaUGUCU- -5'
24527 3' -60.8 NC_005264.1 + 42552 0.67 0.686237
Target:  5'- cGCGCGUcuucgCGCCgGCaGCCUUGC--CGGAg -3'
miRNA:   3'- -UGCGCA-----GCGGgCG-CGGAGCGauGUCU- -5'
24527 3' -60.8 NC_005264.1 + 113255 0.67 0.686237
Target:  5'- uCGCGUCGCaaucUGCUUCGCUACGa- -3'
miRNA:   3'- uGCGCAGCGggc-GCGGAGCGAUGUcu -5'
24527 3' -60.8 NC_005264.1 + 117905 0.67 0.676475
Target:  5'- cGCGCGcaacggGCCCGCGgUUCGCUugcgcCGGAu -3'
miRNA:   3'- -UGCGCag----CGGGCGCgGAGCGAu----GUCU- -5'
24527 3' -60.8 NC_005264.1 + 90585 0.67 0.676475
Target:  5'- aGCGCGgcaGgUCGCGCCUUGCccGCGGu -3'
miRNA:   3'- -UGCGCag-CgGGCGCGGAGCGa-UGUCu -5'
24527 3' -60.8 NC_005264.1 + 144432 0.67 0.676475
Target:  5'- -gGCG-CGCCUGCGCCggcCGgaACGGu -3'
miRNA:   3'- ugCGCaGCGGGCGCGGa--GCgaUGUCu -5'
24527 3' -60.8 NC_005264.1 + 126030 0.67 0.676475
Target:  5'- cGCGCcUCGCCUGCGCC-----GCAGAg -3'
miRNA:   3'- -UGCGcAGCGGGCGCGGagcgaUGUCU- -5'
24527 3' -60.8 NC_005264.1 + 149888 0.67 0.656857
Target:  5'- gGCGCGcCGCCCgguaggcaacgGCGUCUCGau-CGGGg -3'
miRNA:   3'- -UGCGCaGCGGG-----------CGCGGAGCgauGUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.